fb24f3878a10325e890647de6cac20dc *DESCRIPTION
eabf3ec823a6a71733be6761a4ab58e6 *NAMESPACE
3f90e46e45eed4a404a5e14e324e3bf1 *R/abc_utilities.R
6c446c8e4f7fda6a519e938a8cdecef1 *R/aleatory_analysis.R
913d33b11f6e8f514a77cbe7da0e70b3 *R/aleatory_analysis_plotting.R
27946cfb59d3cc6209fc5347e547108d *R/atest_utilities.R
25c24024874a63a99d23c54fc62e4d72 *R/datadoc.R
2a58123b891dae2c3dfde3bae1ad99df *R/efast_analysis.R
e6d3bb80184873374ddba82761bfd083 *R/efast_analysis_netlogo.R
9284d0ec4623185a93bb9f700141ca99 *R/efast_plotting.R
813d2fac9e942e5c1ec46969303b84d6 *R/efast_sampling.R
bf29c6f0fa356ec30f18dbde3894a2da *R/efast_sampling_netlogo.R
5b3b1528e86aa2226da05baae311e418 *R/efast_utilities.R
f70ec06353ecac2b68276e122ab7452d *R/emulation_evolution.R
d177f15728b8328be1eea1e69181b2ca *R/emulation_generation.R
51587b3d98196825529594dcc6175f9f *R/emulation_plotting.R
6292d1e09b94d285fb70b5ca8ea20087 *R/emulation_sensitivity_analysis.R
2d3be921ab5aea0c50108e2d526997d2 *R/emulation_utilities.R
7144107f9f1882fb26ee09d0f89bbe6a *R/ensemble_generation.R
09f326eed2ac6199e66b107085982aaa *R/ensemble_utilities.R
d7b2719ab4df2ac05c72bf0dcdbbf4a7 *R/lhc_analysis.R
2aaa6915f89c167953cb1de9e5dff9a9 *R/lhc_analysis_netlogo.R
41cdd4315c228813a1ed953861b8cb20 *R/lhc_plotting.R
5d5c8a3fbe78eaa1a4e171b58e1ce1bf *R/lhc_prcc_utilities.R
340a46f2844daee3eb85fca8c35b1b7e *R/lhc_preprocess.R
4c1b17882fa3113f971c1d1217f16aed *R/lhc_sampling.R
82a047ad59d845b9110da3484b0fcf9b *R/lhc_sampling_netlogo.R
9dad96c3557c30e79a71058515a90686 *R/neural_network_utilities.R
bf9045339f825021e3cf2f570e769339 *R/robustness_analysis.R
7a3cbf1c0f6bda320d7c962f329392cc *R/robustness_analysis_netlogo.R
60e583c575fd98df1f6f0afdb6211ac4 *R/robustness_plotting.R
93c16080f539f9355af17cbaa2820604 *R/robustness_sampling.R
dc2e7c2fbee6fd2805268481881fedbb *R/robustness_utilities.R
39471955fb67a336681cffd1248c3a87 *R/spartan_utilities.R
225070393c5705267c4705962f3f2074 *build/vignette.rds
c4d3d904ff90aecd166c23485f488aa4 *data/emulated_lhc_values.rda
0515a53ef3366f23b688f2919d630350 *data/sim_data_for_emulation.rda
0694fea47c3f7b0bbcad693fa5cd06e4 *data/tutorial_consistency_set.rda
2f88b17d49c16d642cd0319dcd99e55e *inst/doc/emulation_ensembles.R
9e0a309061a33297c716adb768e4c937 *inst/doc/emulation_ensembles.Rmd
5c93c1afb4e96453000b98b1c8a51cca *inst/doc/emulation_ensembles.html
3394afb19d509800a5031243b10c38f8 *inst/doc/netlogo.R
14f8d4d2de10f2f876725d17ccc863da *inst/doc/netlogo.Rmd
a1114b3c7cc2f875f673aaee50779d6f *inst/doc/netlogo.html
1aef03e0d49d1447b502a37c1533b262 *inst/doc/sensitivity_analysis.R
fad5df70706f6bedd909ce03d305c7de *inst/doc/sensitivity_analysis.Rmd
e17f4da8589c69479d8d4f3bb54c6500 *inst/doc/sensitivity_analysis.html
ad4ec000ae317e88e950977edce6f815 *man/aa_getATestResults.Rd
197334cfd9ce30d3501b200363f066f1 *man/aa_graphATestsForSampleSize.Rd
600220192710cd61fc0cd26c5f4630ad *man/aa_graphSampleSizeSummary.Rd
aef571b720aff7f71f222aed65b602f3 *man/aa_sampleSizeSummary.Rd
a4e3ee234633c90104fd42c49cca3d7a *man/aa_summariseReplicateRuns.Rd
41371d4996234103ff2456bd2a7b6170 *man/analysenetwork_structures.Rd
23b4319f16d7122e487d8fd07acfd382 *man/atest.Rd
9d33aa78698c7ec0ebcbae7616e3fb8a *man/build_performance_statistics.Rd
d2748d89c72541509ad995f795372540 *man/calculate_fold_MSE.Rd
26ef65055d82f93b5baf88ad204aecdb *man/calculate_weights_for_ensemble_model.Rd
6f9e84de0edb966b3f2812f2a25fef04 *man/check_acceptable_model_type.Rd
8ffa4fdbb20c13de7f91741bfe4dfbae *man/check_file_extension.Rd
0eb4320abb8376b854cf92501bd155d8 *man/createAndEvaluateFolds.Rd
a8c330759f98eba2af627c7ebc61c1c9 *man/createTrainingFold.Rd
a7b6dd3a2d4995adaa1441480028e47a *man/create_abc_settings_object.Rd
fd60edc2201d64cc8fe30e091f846519 *man/create_ensemble.Rd
39684572307d2075bcd36a4481786b46 *man/create_neural_network.Rd
908782ce6d509bfd10c3aee18ab878a9 *man/createtest_fold.Rd
00ccac5092f1084a9d46c7b5ffe5bd0d *man/denormalise_dataset.Rd
ee17462e89ef90aa14e95611f3763872 *man/determine_optimal_neural_network_structure.Rd
cc1d96380259622aca20238d611a4b08 *man/efast_cvmethod.Rd
6ecfe881c74d831d3c3b9b2c108a5172 *man/efast_generate_medians_for_all_parameter_subsets.Rd
45a6c5e5dd6cee96f13657f29a21db48 *man/efast_generate_sample.Rd
5739461f80151348cbb1dfa36ef05769 *man/efast_generate_sample_netlogo.Rd
f0f828a4dffbfd3c363a6f6a62e6dd15 *man/efast_get_overall_medians.Rd
54f839b200ac8316bf5e11804047d5a2 *man/efast_graph_Results.Rd
b5f4cf9c8eb4194fb81824a3d2fd04f6 *man/efast_netlogo_get_overall_medians.Rd
488fbb5228eda49dc3da6f0aa7bbe667 *man/efast_netlogo_run_Analysis.Rd
01e5ebacdc4e1b92367824e05d91a7cc *man/efast_parameterdist.Rd
17ac165a24233ccbbe9912059b46f657 *man/efast_process_netlogo_result.Rd
3a33a304512dd037bd0eaea111d9d5c0 *man/efast_run_Analysis.Rd
c8a14dc6254a47b1396ec25d8a4424ad *man/efast_sd.Rd
f5baee68cc1dfc7b682a49ef8c865958 *man/efast_setfreq.Rd
06ec31a8d7c877744ca3c93680d5a914 *man/efast_ttest.Rd
1264e04796118e1d351806da558e5215 *man/emulate_efast_sampled_parameters.Rd
285b53721805a23bbeb449013a68b97a *man/emulate_lhc_sampled_parameters.Rd
7ba4c7af89898d4ad5572d71e1b30010 *man/emulated_lhc_values.Rd
049332ebd7fc22525be5c0866a78ae41 *man/emulation_algorithm_settings.Rd
a0b524ca8ed8402467645daa429856d2 *man/emulator_parameter_evolution.Rd
0049cf594645d615a66c73b8cf19077c *man/emulator_predictions.Rd
c27c5f5f341df3a7bc102d1d69f6d0df *man/ensemble_abc_wrapper.Rd
ea8e2e9feb010d3077e0058e2f97ada1 *man/extract_predictions_from_result_list.Rd
a4405a3ac82b607d8bbe9b6f838070db *man/generate_emulator_model.Rd
b1d961080a07edd511cc394ab84a6332 *man/generate_emulators_and_ensemble.Rd
4e37648925b6928575dede5264919f81 *man/generate_ensemble_from_existing_emulations.Rd
5f2d2e608b235e632b2848defdf3de57 *man/generate_ensemble_training_set.Rd
04c0f39558e92ff8d61b1254145400ad *man/generate_model_formula.Rd
2dd9188383eca96a054ffcbb60da4254 *man/generate_predictions_from_emulator.Rd
6f6a3616924ef9fa0114b0f9811a0ca5 *man/generate_requested_emulations.Rd
32ae5828d1db5557b47d95090aec96d1 *man/getMediansSubset.Rd
2efef357d3601fc65ed72cc60b01b068 *man/graph_Posteriors_All_Parameters.Rd
5eae938196ad301ace9089fe09aa67ba *man/join_strings.Rd
46d57eb9029b68d5cefc6efdb15ddb1a *man/join_strings_nospace.Rd
418798e8b882797e548569b18804ea76 *man/join_strings_space.Rd
765647e5b79187da0dd8c9a45865bfee *man/kfoldCrossValidation.Rd
a9029ba22b88d62aae8433e264e2b9aa *man/lhc_calculatePRCCForMultipleTimepoints.Rd
514516a2b0749c68a8396a6e3901870d *man/lhc_constructcoeff_dataset.Rd
5ce1d5b01a1a9b18f57fb6e6561361ff *man/lhc_countSignificantParametersOverTime.Rd
cc3beeea751000b5c344bbaa985bca09 *man/lhc_generateLHCSummary.Rd
0747cd2a277dab357beaaca13df3b0b3 *man/lhc_generatePRCoEffs.Rd
391f445150ff9e0180a7a834c6c882d2 *man/lhc_generateTimepointFiles.Rd
20287bdf31ffa59609bcd6a76b5fedb5 *man/lhc_generate_lhc_sample.Rd
a2755941ae83352475b45aea0e2d87fb *man/lhc_generate_lhc_sample_netlogo.Rd
69b28e6b84210e61d805ddac619e1095 *man/lhc_generate_netlogo_PRCoEffs.Rd
3f0439fd2c446f5ec0b220931b22da55 *man/lhc_graphMeasuresForParameterChange.Rd
61ae61ee73861d9a606128b26fabc09e *man/lhc_graphPRCCForMultipleTimepoints.Rd
9d2b77b6b0fd24ec7bbd01bd02288cb0 *man/lhc_netlogo_graphMeasuresForParameterChange.Rd
86719790ce7040d08ab3ff3c4153549c *man/lhc_plotCoEfficients.Rd
3b7f51377df0bf790232bd94feb34cfd *man/lhc_polarplot.Rd
8bdf243cd388b01837a45bfc374df024 *man/lhc_process_netlogo_result.Rd
fd3edfa33abfcb93ce1fa9d6e50bed28 *man/lhc_process_sample_run_subsets.Rd
12a363ca8e3db2f6578751063e5ca426 *man/make_extension.Rd
2e517fb58a2fe919bdf646eee1929170 *man/make_filename.Rd
62a561438a8f2698e53ad093111c7fad *man/make_path.Rd
462d96c6c842d12e49d07300e8bc99fa *man/meanSquaredError.Rd
89be2ba62044eea04160c067145ba6c7 *man/normaliseATest.Rd
c206452195ccdcf439126c00093d43f1 *man/normalise_dataset.Rd
c41e4d0bd49390b07bbce65ea9738376 *man/nsga2_set_user_params.Rd
b838b1563df319559a5d5bc0a8f463c5 *man/num.decimals.Rd
f78c24bfadf66a0db40ccc30507d4a53 *man/oat_countResponsesOfDesiredValue.Rd
a212c887e49e0db82f49a0822f5dc7b4 *man/oat_csv_result_file_analysis.Rd
1e99ab0667e562f0d15488a4be48a450 *man/oat_generate_netlogo_behaviour_space_XML.Rd
edd9e1c796a228fd9736783f6e3c2dae *man/oat_graphATestsForSampleSize.Rd
cd34a6a941162052f40c4c505a6c0bb7 *man/oat_parameter_sampling.Rd
4fb2bfc95ba3416da48d13eae40aac02 *man/oat_plotResultDistribution.Rd
e41517df9bebd47d6442791a560cb9ec *man/oat_processParamSubsets.Rd
16b64b06d38f37c99bfa9783c038999d *man/oat_process_netlogo_result.Rd
1396c734fc44fb8108392fe5547ca3ac *man/partition_dataset.Rd
6a3dd51c3afa28fb67b28ec6c7adc9d7 *man/pcor.mat.Rd
103526f331591e7cd1967ea2034cbab5 *man/pcor.rec.Rd
4321e8c1c6e96e3ea3199058d278d925 *man/pcor.test.Rd
ada8370be96ca878bc24744b55d566ea *man/perform_aTest_for_all_sim_measures.Rd
90bb11bbdbeb839aaeda54ddaeb41fbe *man/plotATestsFromTimepointFiles.Rd
9d667224b2f64a0c33764b71f308f536 *man/plotPRCCSFromTimepointFiles.Rd
a385d2221590652f351540e012f8c8df *man/plot_compare_sim_observed_to_model_prediction.Rd
ece284cf2fb7bb79007302cf9f4d55ab *man/ploteFASTSiFromTimepointFiles.Rd
6cef28a4f0157af519c3166f2f8482db *man/prepare_parameter_value_list.Rd
a15d2b43b84c34c0659669f9de1566c4 *man/produce_accuracy_plots_all_measures.Rd
b4a1d31471e7c51434886c57c8aa5c87 *man/produce_accuracy_plots_single_measure.Rd
0a6e8ee382a4668770427c973e74fd9e *man/rSquared.Rd
ea049d02bae0520f54a32bbfff0a5407 *man/screen_nsga2_parameters.Rd
e6ea69d81c21c8601168099972435ca4 *man/selectSuitableStructure.Rd
26c36006923409bab9ee6cd74e2c9e31 *man/set.nsga_sensitivity_params.Rd
4ab662eedd5560fe4bf38a19f3e7fbf6 *man/sim_data_for_emulation.Rd
73fd2a3f0609a36d42bf1fa039aba93b *man/tutorial_consistency_set.Rd
4f4d2e4707994f4449c47ebe27a56614 *man/updateErrorForStructure.Rd
d84aa047afe4b7933757ac0fe2383955 *man/use_ensemble_to_generate_predictions.Rd
8c2cba04c9d71a02ff43e2982e8abe76 *man/visualise_data_distribution.Rd
b57973491df0bb0aca7616980c4cf9aa *man/weight_emulator_predictions_by_ensemble.Rd
e63f8d2dca3dfc06f604c41ff53ee9e3 *vignettes/Figure1.png
e1e2343af29d7d1f60529785ddd5495b *vignettes/Figure2.png
e1630f54e73ed68e5e7b640cede5524e *vignettes/Figure3.png
80068225f28be9d5b797a17bebcaafa6 *vignettes/Figure4.png
9e0a309061a33297c716adb768e4c937 *vignettes/emulation_ensembles.Rmd
14f8d4d2de10f2f876725d17ccc863da *vignettes/netlogo.Rmd
fad5df70706f6bedd909ce03d305c7de *vignettes/sensitivity_analysis.Rmd
