#!/bin/sh
cd src

CC=`"${R_HOME}/bin/R" CMD config CC`
CFLAGS=`"${R_HOME}/bin/R" CMD config CFLAGS`
CPPFLAGS=`"${R_HOME}/bin/R" CMD config CPPFLAGS`
CPICFLAGS=`"${R_HOME}/bin/R" CMD config CPICFLAGS`

CC="$CC" CFLAGS="$CPPFLAGS $CFLAGS -I$R_INCLUDE_DIR $CPICFLAGS -D_XPG6" \
./configure --enable-embedded --enable-embedded-r \
--disable-fits --disable-geom --disable-rintegration --disable-gsl --disable-netcdf \
--disable-jdbc --disable-merocontrol --disable-odbc --disable-console --disable-microhttpd \
--without-openssl --without-uuid --without-curl --without-bz2 --without-lzma --without-libxml2 \
--without-perl --without-python2 --without-python3 --without-unixodbc \
--without-samtools --without-sphinxclient --without-geos --without-samtools --without-readline \
--enable-optimize --enable-silent-rules --disable-assert --disable-strict --disable-int128

echo '

libmonetdb5.so:
	$(R_HOME)/bin/R CMD SHLIB -lz -lpcre -o $@ `find $(SUBDIRS) -name "*.o" | xargs echo` 

all: $(BUILT_SOURCES) monetdb_config.h
	$(MAKE) $(AM_MAKEFLAGS) all-recursive && $(MAKE) $(AM_MAKEFLAGS) libmonetdb5.so

' >> Makefile

cd ..
