7d2e2d82e0c1e96fc3b66118d9af551e *DESCRIPTION
81f09a061b48aaa1c6736d4b04c6ac85 *LICENSE
a7363619842ceb1f01108e5a624b7b24 *NAMESPACE
509afcc2292ff71a80948be28e63eb24 *NEWS.md
cd34c6df2b76022b2d24dd5752a8b137 *R/ModelDiffNet.R
c165aa282e361c33fc9d233beb2316da *R/ModelSEIR.R
dc5f82e18481336c235a0808126d1de8 *R/ModelSEIRCONN.R
89b09037d653bf58f92fbbda3c997bb0 *R/ModelSEIRD.R
7a721de02ea3181ce670c4089e856aac *R/ModelSEIRDCONN.R
6ae3c0fe9dc92e3df63a63a16dacebb5 *R/ModelSEIRMixing.R
d921d2e94a5f3035398e3433288e5f1e *R/ModelSIR.R
60adcab8929e3006c08cb489687f9dec *R/ModelSIRCONN.R
3ccfb38ccee7a8f84f59dd5b84d7f822 *R/ModelSIRD.R
dd3de246061b1b0cd21b526553a9ce83 *R/ModelSIRDCONN.R
919723dc60b917587eaf67d721c1f226 *R/ModelSIRLogit.R
5798948f1c789dab562a8ae4a5e8ce3b *R/ModelSIRMixing.R
d077dcf65a4b81b48d1e19b7c99b4c86 *R/ModelSIS.R
dde24664cfb63a760a3f129deeb4ca20 *R/ModelSISD.R
37bf4e3cfbe097df3c6c70dddfe1b8da *R/ModelSURV.R
3f37cd60cb87aea0d3313e3aa6f9580c *R/agents-methods.R
5fb0149eaee011d93c127649f69c2410 *R/agents.R
93dfb02d60dab4c7c7500a361184c079 *R/cpp11.R
6a911780cfb352b5e7656aaa7cd3ef3c *R/data.R
3641d7c2017a8c24b6c36efca92fee1b *R/entity.R
545fb39bb9d0e546fa587c4340fd68bc *R/epiworldR-package.R
286e08daf1a42f3cf17a570fe358fa9c *R/epiworldR-package.R.in
bb71f9b7baa065a78c032afb6b85f88a *R/functions-renamed.R
a5325a343ebfef37dfde83c8e98efe2e *R/global-actions.R
7eb55b2b668b9c610e26ed7642a22073 *R/make_saver.R
1dae5a1aa082d5ce4df1cee68409b7a8 *R/model-methods.R
f1943ef36a9bec1236bf5fa66af36d3b *R/plot_epi.R
dff24ffc115247dbd1cbdf9ccc221558 *R/tool.R
1a12c5d06713173f29f431307a139df7 *R/virus.R
c39b6adb8a8ede2c8bc443c40e942202 *README.md
2082ea106522b4e81f0a7e9965716482 *build/vignette.rds
c3cded853a2388ad53569a7105d1c1e3 *cleanup
7d8da142d7d62d0a3a3ebdae1b699d84 *configure
363ab7aa60e5b9dbca8bfeef5cd2e53d *configure.ac
a57b80f03a22e94797ba3164e40da04f *inst/CITATION
dc40913dc28470aa848e0732c6301fce *inst/doc/getting-started.R
8ec13527387fbf95c2d2a324fdab5283 *inst/doc/getting-started.Rmd
22482af077b6dd9826958496ed7f19c1 *inst/doc/getting-started.html
dcde52c5b6354abd93112b5c309a8cc1 *inst/doc/implementation.Rmd
13fbe4327e92a832842fda891721c865 *inst/doc/implementation.html
313b30912f0c33513fc13014a1371e4e *inst/doc/mixing.R
570ae51118c63af23eeaf7834762acbf *inst/doc/mixing.Rmd
07373a8251de034a6367e65dd73f4241 *inst/doc/mixing.html
eeded2152db7cabdcf27aaf83a1c7e14 *inst/doc/run-multiple.R
34695f69868f8ca711d88b28c90393e3 *inst/doc/run-multiple.Rmd
a004e5ce057e0802d8a2eb87bc883449 *inst/doc/run-multiple.html
021e66e0a21d6a6e68e76154118eee23 *inst/include/epiworld/adjlist-bones.hpp
9f9eb7e90de871ad860afe306db9ae38 *inst/include/epiworld/adjlist-meat.hpp
1780df3fbe7eb56044b4fb26e619dfe9 *inst/include/epiworld/agent-actions-meat.hpp
4d714ed2969ea067ed2bb2c34da26d5c *inst/include/epiworld/agent-bones.hpp
033b8608b1c61a43dd881bd42efd4849 *inst/include/epiworld/agent-events-meat.hpp
af15ce9cddefb3ddb8d93164c044b51a *inst/include/epiworld/agent-meat-state.hpp
3c238633cb61e2b64f260584d30c915b *inst/include/epiworld/agent-meat-virus-sampling.hpp
dc4dc744b52988b5b08970d76c12b9a9 *inst/include/epiworld/agent-meat.hpp
55c8bcdfab2880d851956a87f9923c5a *inst/include/epiworld/agentssample-bones.hpp
f66ac640fe8f800a826df9295a2a8292 *inst/include/epiworld/config.hpp
ec33ac7f493f3b5f86676951ba243f45 *inst/include/epiworld/database-bones.hpp
898b65ed6325a337b4ac25ed51c6182d *inst/include/epiworld/database-meat.hpp
f8f46142fe4c6d2b2049449ba63db301 *inst/include/epiworld/entities-bones.hpp
785f7d54a17b751e7a8fc30349799eac *inst/include/epiworld/entity-bones.hpp
8d527ca963bbfdea3fdce86c6f65fc9c *inst/include/epiworld/entity-distribute-meat.hpp
6b692d2b453c1a94df343d15717456f8 *inst/include/epiworld/entity-meat.hpp
3c80780d53fb6bd71392a440d2150a26 *inst/include/epiworld/epiworld-macros.hpp
e7331a0de65f44a952645f6f525f9ecc *inst/include/epiworld/epiworld.hpp
57a7c6d00757711fa3e0ad4470f8f5e4 *inst/include/epiworld/globalactions-bones.hpp
a47025f622881a5200456359e32fdd33 *inst/include/epiworld/globalactions-meat.hpp
3490fe919ac35ec79e0c7b449cec5efb *inst/include/epiworld/globalevent-bones.hpp
433c67a2facc2fd9e2bbb6d3442c848e *inst/include/epiworld/globalevent-meat.hpp
6e65a4353f8365643544f22fdbdd9cb9 *inst/include/epiworld/groupsampler-bones.hpp
71aee57e0c26584b956454e7ccdc017c *inst/include/epiworld/groupsampler-meat.hpp
7982ad518beeb98b59ef5a25417bacf8 *inst/include/epiworld/math/lfmcmc.hpp
4eff0e22a75a85f99ed41aef5ac3ea99 *inst/include/epiworld/math/lfmcmc/lfmcmc-bones.hpp
e24ef31af1c4594c3a4d569d9408db07 *inst/include/epiworld/math/lfmcmc/lfmcmc-meat-print.hpp
c135f614b48c5cd469043a9d883324b9 *inst/include/epiworld/math/lfmcmc/lfmcmc-meat.hpp
2aa4442bccba94a5fb0c88e328f3788c *inst/include/epiworld/misc.hpp
45c6d7a7609fb73dbc3ffec60ea160ea *inst/include/epiworld/model-bones.hpp
4c4a8b22b2ac48688463da1d31dc2694 *inst/include/epiworld/model-meat-print.hpp
264c611a18d29cae7039f63f470d2002 *inst/include/epiworld/model-meat.hpp
3f56406e10c3461af5c57e4faeae045e *inst/include/epiworld/models/README.md
5f1f7564f426c5f7081a7a16c7bb87be *inst/include/epiworld/models/diffnet.hpp
2de6c8155da43cf47243f930b8089b8d *inst/include/epiworld/models/globalactions.hpp
0ee9b62d0aa41b9a49aa32b1c16bed57 *inst/include/epiworld/models/globalevents.hpp
b1cf6ff9ed2adc0c2bd77aabec86448e *inst/include/epiworld/models/init-functions.hpp
397fe33ef553b6ebe84572d4db931c45 *inst/include/epiworld/models/models.hpp
8333d2ffba7d5f49ad665afdac80a7b3 *inst/include/epiworld/models/seir.hpp
8c462c0dfea096bd84b3193120590f7e *inst/include/epiworld/models/seirconnected.hpp
3b8fe8705469adcdf5a82c0d535adcbf *inst/include/epiworld/models/seirconnected_logit.hpp
7536543d6c1adf7e2e4b3c3865bb34b7 *inst/include/epiworld/models/seird.hpp
f03d2a1e9a89324c93c5df057fb49312 *inst/include/epiworld/models/seirdconnected.hpp
02473103c9ffd475106d5ffc9fdf2bf9 *inst/include/epiworld/models/seirmixing.hpp
2cb5abbe789fd3352524dcc70046dd57 *inst/include/epiworld/models/sir.hpp
d80bfc19e7230c6cefbc2877356ba09a *inst/include/epiworld/models/sirconnected.hpp
4f806a2095e504c8e39d31b328f52ea2 *inst/include/epiworld/models/sird.hpp
706a11e3b9b00f8e7f13f7a979fbef96 *inst/include/epiworld/models/sirdconnected.hpp
cef720710f727f0045e1f57733deb53a *inst/include/epiworld/models/sirlogit.hpp
c1d3d3975902557cf7bec7314ac0d0b2 *inst/include/epiworld/models/sirmixing.hpp
02a7b4d7059f5469bd35a244760512c2 *inst/include/epiworld/models/sis.hpp
fdd6fedd3005ca885406156949240787 *inst/include/epiworld/models/sisd.hpp
cd90d6476776476531474a53650a8578 *inst/include/epiworld/models/surveillance.hpp
c33343d870e393248e50a0629c957fd3 *inst/include/epiworld/network-bones.hpp
a5fb1fefc48c4866aad40ff9e607aec9 *inst/include/epiworld/progress.hpp
5eae0fefdcd5cfa405080f6718d79ab5 *inst/include/epiworld/queue-bones.hpp
0d11552f3a3d1cdb1f559b6904de8f4c *inst/include/epiworld/randgraph.hpp
d04b3dd6dceac6df8eea112b0d0529fe *inst/include/epiworld/random_graph.hpp
00214ba1f238f3b885ce673b6ee3b83a *inst/include/epiworld/seq_processing.hpp
c0da9d9ee49f22961c56314d167d0590 *inst/include/epiworld/templates/viruses.hpp
795d64b5d6574012402cdfc66d6dc844 *inst/include/epiworld/tool-bones.hpp
9ca79c3cd4fb88694a1fe4d0892e342d *inst/include/epiworld/tool-distribute-meat.hpp
64503b2ee345c9e26a8b54ae68944a86 *inst/include/epiworld/tool-meat.hpp
e05046851ceb09118f5f77753e7a784b *inst/include/epiworld/tools-bones.hpp
05b94e47394e35d4667d432a31bf8833 *inst/include/epiworld/userdata-bones.hpp
60ab5c7fbbe0306274b74bf7decf1054 *inst/include/epiworld/userdata-meat.hpp
10022eb902a1ef33d1f773a8af169044 *inst/include/epiworld/virus-bones.hpp
424e6036ce17978867945248f3b32b56 *inst/include/epiworld/virus-distribute-meat.hpp
72af1199306b86c95f6b51580edbcdac *inst/include/epiworld/virus-meat.hpp
45c752ac08f54a7f790cb08e39b96b82 *inst/include/epiworld/viruses-bones.hpp
d544bbc8f69e8c8160f2ce15b957524a *inst/tinytest/test-get.R
acb34e36ac53715253b77b139e1be3b3 *inst/tinytest/test-mixing.R
6b325439341b3783bbc7f69da9a379d2 *inst/tinytest/test-multiple.R
8f7bc68efefb009b4c000d77491e8f08 *inst/tinytest/test-sir.R
e2e266b81702788e46921dbb0b50c6c8 *man/ModelDiffNet.Rd
336b3508093a1a426c3d9c5862f91df6 *man/ModelSEIR.Rd
5cc8801eb6eb70253d9ac20872f76a46 *man/ModelSEIRCONN.Rd
3c279fa9bdd3b24f21f9d120bba0710b *man/ModelSEIRD.Rd
9a09c56aa8eae61c6479de92977d4f99 *man/ModelSEIRDCONN.Rd
e8a7fa192db3d8d4c24c49789a15a9e5 *man/ModelSEIRMixing.Rd
61c3acb1d06adca4535f7a581bd53815 *man/ModelSIR.Rd
c19b125f937cd99abd3000c3af363d51 *man/ModelSIRCONN.Rd
e3561ad2055a5bafb6e1c70256b579f0 *man/ModelSIRD.Rd
361013ae64142a343572eccfee8b300b *man/ModelSIRDCONN.Rd
c886aca0774ce8446fa6e5ffcb733035 *man/ModelSIRLogit.Rd
088e78f7705b7b61d383fdf2a8eaac8f *man/ModelSIRMixing.Rd
38cd97701b6682b78e5a847a228dcc10 *man/ModelSIS.Rd
276c93003ed808d67ffeff16a3a81f91 *man/ModelSISD.Rd
67be7da672c5ddbeeb50870899710186 *man/ModelSURV.Rd
64358c62b4f7403ccd6b220bd85768c4 *man/agents.Rd
3e8257fc05ade1fc7d1b16eb3c5aad21 *man/agents_smallworld.Rd
1103bf629069d5c8ad08b087b2889dcc *man/entities.Rd
97217363210d195b874a96274f3228ca *man/epiworld-data.Rd
4b56e6f393f9617be0626aeeb1b4d498 *man/epiworld-methods.Rd
727f080c218cbabca6be34a3729f9a56 *man/epiworldR-deprecated.Rd
2d4008f7d53e4890780d4fad535de6c4 *man/epiworldR-package.Rd
75df064b2e18f9c5a5b5b67618551a9c *man/figures/README-logit-model-1.png
8b0f7a4e5d1bc00e944395e8b118e6ca *man/figures/README-multiple-example-1.png
db63838de62aa77e29837177397592c8 *man/figures/README-seir-conn-figures-1.png
0feba7af0baa3a836ca6b1ba061850e3 *man/figures/README-seir-conn-figures-2.png
fe11ddeb3461f40a4c24fe7376f6d5ac *man/figures/README-seir-conn-figures-3.png
a86bffb47bd991cfc2d8463b7f42c82c *man/figures/README-sir-figures-1.png
48061c8b87608cd1abc6e6923597e866 *man/figures/README-sir-figures-2.png
aa50fc43cbedaefc6d1cb1bfc2bdc50e *man/figures/README-transmission-net-1.png
f3be6da9bd595e33b48ec82b7ef282cd *man/figures/README-unnamed-chunk-4-1.png
37d7a1e9a0d86050fb823b25313c0088 *man/figures/README-unnamed-chunk-4-2.png
928d113b4860424d2a8a4ab3b389e2c3 *man/figures/README-unnamed-chunk-4-3.png
e7928e20cf7cc7fa1a9f5bfb9d41b37d *man/figures/README-unnamed-chunk-4-4.png
359e8a52f6d6ac0a06376c9573e5ef04 *man/figures/README-unnamed-chunk-6-1.png
d06fb631e5a2810823a4f4afce576713 *man/global-actions.Rd
9779b870e9bd70be4031053a7c12b4e2 *man/run_multiple.Rd
637197cdda5497201e472a66cf21ba47 *man/tool.Rd
9c829b0b51f4b9ffda2f3abf12bfc6a6 *man/virus.Rd
efd5abbdff3847425b6560ec161f0738 *src/Makevars.in
a95163bceb448b0f265b4f7febba05fc *src/Makevars.win
0a3774ca7fa5ca938a0c51ef2b2d5b6e *src/actions.cpp
de0a79062a44e922bea68f334b0463a6 *src/agents.cpp
c1c7191e2175b5387978fa1759b8985d *src/cpp11.cpp
338da8d3e1ecddd05b208cb618470d53 *src/db.cpp
cee13bf33ffb832eff983f1650c869ab *src/entities.cpp
33eeb2e191edfb50a0010a43884fe9d1 *src/epimodels.cpp
f3dc32c75ef7067e97e8bebc7d6c3acf *src/epiworld-common.h
bb2f4807d1639894d68a42fa27db8c4b *src/model.cpp
4f480d3bc9a9b6a535965b5093952570 *src/tool.cpp
0cff7ee1ffdb08616818a4709b04926a *src/virus.cpp
8ec13527387fbf95c2d2a324fdab5283 *vignettes/getting-started.Rmd
dcde52c5b6354abd93112b5c309a8cc1 *vignettes/implementation.Rmd
570ae51118c63af23eeaf7834762acbf *vignettes/mixing.Rmd
34695f69868f8ca711d88b28c90393e3 *vignettes/run-multiple.Rmd
