% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{taxobase}
\alias{taxobase}
\title{Reference Taxonomic Dataset (taxobase)}
\format{
A structured list containing the following pre-computed components:
\describe{
\item{taxa}{Character vector of 52 candidate genera.}
\item{found_taxa}{Character vector of candidates found in The Taxonomicon.}
\item{coverage}{Named logical vector indicating database presence of each taxon.}
\item{matrix}{A pre-computed taxonomic \code{dist} object for \code{found_taxa}.}
\item{pairwise}{A pre-computed distance result for \emph{Tyrannosaurus} and \emph{Homo}.}
\item{lineage_homo}{Taxonomic lineage returned for \emph{Homo}.}
\item{lineage_tyrannosaurus}{Taxonomic lineage returned for \emph{Tyrannosaurus}.}
\item{closest}{Result of a closest-relative query for \emph{Tyrannosaurus}.}
\item{filter}{Taxa in \code{found_taxa} assigned to Theropoda.}
\item{search}{Reference search result for the term \code{"Bacteria"}.}
\item{statistical_taxa}{Character vector used by the statistical applications vignette.}
\item{statistical_matrix}{Pre-computed \code{dist} object for \code{statistical_taxa}.}
\item{metadata}{Data source, generation date, package version, and distance definition.}
}
}
\source{
\url{http://taxonomicon.taxonomy.nl}
}
\usage{
data(taxobase)
}
\description{
A pre-computed reference dataset for 52 candidate genera distributed across
major taxonomic groups. The data were retrieved from The Taxonomicon using
the package functions and are intended for examples, documentation, and
offline inspection of package output structures.
}
\examples{
data(taxobase)
length(taxobase$found_taxa)
head(labels(taxobase$matrix))
}
\keyword{datasets}
