63aef5fba954aa6a9643f9840023b311 *DESCRIPTION
2f297b0bf8e0c7af00b23786feac6ae1 *NAMESPACE
118fecdd442eaa6d5a0a98805384280d *R/AAmass.R
cf2ecaf60b8197950efbb82e389aa689 *R/AucRoc.R
072675e7e745acfa48cb80b7a8f91928 *R/VolcanoPlotW2.R
2d76e911e56899b442f5f78419775c3e *R/cleanListCoNames.R
cbf71009fa00fb95a101e59bde8d7806 *R/combineMultFilterNAimput.R
02b4be7bf287e9b94811fa69c9dce52f *R/convAASeq2mass.R
ac46c9bc4c156346d9cebb47eb9c5b7e *R/corColumnOrder.R
d35d0e5447245f630d99b323906592bc *R/countNoOfCommonPeptides.R
6f7bca48505a87ebb636723c84f5e32c *R/extrSpeciesAnnot.R
05c09f6f72805d71b074b85c4f44d581 *R/extractTestingResults.R
31f0e2819997c9a364088b9f1f61958e *R/foldChangeArrow2.R
c7623672922e0270ff055006f5bd857f *R/isolNAneighb.R
43ae4cd8b72bc046520f801cc27b686f *R/massDeFormula.R
0daa430407f4b9864c5399b765fe5d2b *R/matrixNAinspect.R
3697f4afc5f62475c705776eb14ac692 *R/matrixNAneighbourImpute.R
2722dc2058c67e3d9657d87353552da9 *R/plotROC.R
ac0a348fc261b369252d02c653d5747f *R/razorNoFilter.R
79432937e2a264a4b09534fd4e4ee950 *R/readFasta2.R
71e1f49912abbf776744e41dd4fe3d1e *R/readFragpipeFile.R
6614202b60febf38b00cbc7bb5eb4eb4 *R/readMassChroQFile.R
fc5ad90b85d0eaa63b0795fb466cf1da *R/readMaxQuantFile.R
c07e652c8182b6343cee9607a9c91188 *R/readMaxQuantPeptides.R
7a8fdd669bf709c4450144d5276a3dd8 *R/readOpenMSFile.R
b8a12584f2be95f784ef6d681e8d7428 *R/readProlineFile.R
765abc7796cece06d217b42f50b5adf0 *R/readProtDiscovFile.R
8c740ca4075335795b7149c93ee5c02b *R/readProtDiscovPeptides.R
491a547ddc48d46f5740e94f0d779d3c *R/readSampleMetaData.R
5f0dce45e1f523db25a25864f52e7547 *R/readSdrf.R
7149a6c0f620e634da0e03f1fb33726c *R/readUCSCtable.R
516778a934662a71be123e02fc089070 *R/readUniProtExport.R
4dc7dffb12b6749f97464d53093b51c4 *R/removeSampleInList.R
f8570ef46179192256acf12e62087cd5 *R/replMissingProtNames.R
68f75cd39c036b8c128059ff535c6288 *R/summarizeForROC.R
21d2f327b62b8a40397d7765e38dbc05 *R/test2grp.R
d54f32cedf9dc91f0e78c8982b74da72 *R/testRobustToNAimputation.R
192437e73f28d0aa535e00a0befbc53e *R/writeFasta2.R
52ffe438bd27049bf695b154c5b4f878 *build/vignette.rds
5c3f9648785b90d4fb2fd87fb75e3eea *inst/doc/wrProteoVignette1.R
8b046fed8caeed8dd79eaba1ccfe1107 *inst/doc/wrProteoVignette1.Rmd
554576e3814dd741a38279b43ec73bd3 *inst/doc/wrProteoVignette1.html
4bea3ab451d3548a6449f7b46c6552cf *inst/doc/wrProteoVignetteUPS1.R
a4d7283ed2616d8675399b0d83c0cb5a *inst/doc/wrProteoVignetteUPS1.Rmd
bf56f826ed3fe3e01f3f4b43a3ef693a *inst/doc/wrProteoVignetteUPS1.html
5a36dae79d2427c12f424b7b63273b63 *inst/extdata/OpenMS_tiny.csv.gz
fa4ddbca3647427a25de3ca91325b01d *inst/extdata/UCSC_hg38_chr11extr.gtf.gz
972ead93de7417ee0e26aa687f5027e2 *inst/extdata/conta1.fasta.gz
ecce9c03a56859d9d2e35f6a8c7ac3c7 *inst/extdata/deUniProt_hg38chr11extr.tab
fd088c93fc9d4ce11d75cdccb3e51fcf *inst/extdata/exampleProlineABC.csv.gz
ef3a127cb7bd36499883856839d3b989 *inst/extdata/exampleProtDiscov1.txt.gz
3339337d25ff8813704da6921997476e *inst/extdata/parameters.txt.gz
c3cbb00e063cbb974e7f197a076c512d *inst/extdata/peptides_tinyMQ.txt.gz
903b0a68307c4e9541c89ecd39941cfe *inst/extdata/proteinGroups.txt.gz
359b295c744d24f3af38275d661c6e59 *inst/extdata/proteinGroupsMaxQuant1.txt.gz
393f403f2829db9fe4ff28794a423633 *inst/extdata/pxd001819_PD24_Proteins.txt.gz
a91db83677978169a0576c7a4ca3e749 *inst/extdata/pxd001819_PD_InputFiles.txt.gz
cfc7e9ff9779723c2871262ce1ebac39 *inst/extdata/pxd001819_PL.xlsx
5244b011e37cd5fc0a53ec480d01c3b8 *inst/extdata/summary.txt.gz
16d4e227fb74166e15d9ef132aaf9daa *inst/extdata/tinyFragpipe1.tsv.gz
bf47bf530aa4861f0cc3aa05c7420091 *inst/extdata/tinyMC.RData
4ce3b64b9a16c21aebb640440016c6d3 *inst/extdata/tinyPD_allProteins.txt.gz
d304e0b6672110cb2d1ea1de5752908d *man/AAmass.Rd
3d03929514e01499b9d5fea11ba1b609 *man/AucROC.Rd
7f7a04a4bcace1c3c5685a0eea27e282 *man/VolcanoPlotW2.Rd
308a97c8289e6316fd3d69d18a23dcce *man/cleanListCoNames.Rd
e6e9868546ae5201949565707336fa24 *man/combineMultFilterNAimput.Rd
3a3ada0e10c0a28266820259d271152b *man/convAASeq2mass.Rd
4510738347d65d5e482acdfd77a9d9d8 *man/corColumnOrder.Rd
a19446e79e02b27474147524a82fe4fe *man/countNoOfCommonPeptides.Rd
7aa8f38724d98c790cd7e13de57b936f *man/dot-atomicMasses.Rd
e84440c1cd38d837a13c2e80082d5cf2 *man/dot-checkKnitrProt.Rd
abce41df5122858c611ba336ea142125 *man/dot-checkSetupGroups.Rd
68a9c82f66347e10de1d4f08d937d46a *man/dot-commonSpecies.Rd
b30ea76427a48963cce3bda94c9c4f28 *man/dot-extrSpecPref.Rd
d0b8063f9e3e97168a49863d8c7d790d *man/dot-imputeNA.Rd
5045cb0dca5af6f6a427102c5e16b5be *man/dot-plotQuantDistr.Rd
d882966f436b7a20e61c8bd917aa75cb *man/extrSpeciesAnnot.Rd
993a2b7af501d1a6c3a06b69ab6d553d *man/extractTestingResults.Rd
8b0d38bcb385e03d56038f7ccc3b98e4 *man/foldChangeArrow2.Rd
115f92c8b0c2ef3c3cc1d24289542ee4 *man/isolNAneighb.Rd
1409eac1ed4166a707be5a308442fa1d *man/massDeFormula.Rd
f44c40700f284e7609d952fcd0690f64 *man/matrixNAinspect.Rd
7e5ba7ba594f3521abd45a44a7fce982 *man/matrixNAneighbourImpute.Rd
d628b536b6b5d03558a346b190db6704 *man/plotROC.Rd
d01daf4c32f167ee6e81da8f900613dd *man/razorNoFilter.Rd
e07f31dc7c0d488001b9c3babf9d9a5f *man/readFasta2.Rd
8d72353a6d19599ebbd730526edb3dfe *man/readFragpipeFile.Rd
6d169add07052ffa5f3c9f5f213ed0e2 *man/readMassChroQFile.Rd
25eb79a62454568d6acd6cf2e50ebbd5 *man/readMaxQuantFile.Rd
c7412531fd50080f6d8e4fa091ca4e89 *man/readMaxQuantPeptides.Rd
bd7a4ac97771ae4f529cf1c218fb04ea *man/readOpenMSFile.Rd
cfaeaf7f4a375ef1b9d6a5feb594b3e0 *man/readProlineFile.Rd
d256c7518507d9c15c198bb54caefa24 *man/readProtDiscovFile.Rd
fea79b74697e24e5bde40ecdb5b19c83 *man/readProtDiscovPeptides.Rd
075b069e50f895d0711050805b2b1462 *man/readSampleMetaData.Rd
8c910a97b60568f65ef9cd5d00144b98 *man/readSdrf.Rd
efb3435b5c77bc53b2ffd586a3dc1b08 *man/readUCSCtable.Rd
5ea0a4f1e7525318e160462db2027dc4 *man/readUniProtExport.Rd
524853a4e656f9e0cb818615f2079910 *man/removeSampleInList.Rd
f28528858a408af0cd7a2770da5a89a4 *man/replMissingProtNames.Rd
02cf9ef9b59ff7fd4ea781cca9232d82 *man/summarizeForROC.Rd
ba009c8308b27e0c88c34c2c18f99009 *man/test2grp.Rd
34496704d974ca785759ef2dc9cdd332 *man/testRobustToNAimputation.Rd
8d61ba091677cb19e1c54c298f997f91 *man/writeFasta2.Rd
8b046fed8caeed8dd79eaba1ccfe1107 *vignettes/wrProteoVignette1.Rmd
a4d7283ed2616d8675399b0d83c0cb5a *vignettes/wrProteoVignetteUPS1.Rmd
