d73bdcbc8a1d46c9ea5fa97fa9a41de2 *DESCRIPTION
2e0fb41d0325fbaf42b0cb58fb885bd5 *LICENSE
14e60d20fbc2f2e817d305333298bac8 *NAMESPACE
72f3cf04037ec15ea33145ccd9c28656 *NEWS.md
96287cec35f4f7f04250c9a4c1711708 *R/ECS.R
26281db66828f343aa60be17ed6b98fa *R/PAC.R
9459984ae145c9a903cec86ba05cd251 *R/RcppExports.R
d64db47387c8e2b09d59d956a6b796ec *R/convert.R
031ad0b1a2737bf16919a3ca90355e94 *R/generics.R
377ec67e13819021627ea4b88b686b63 *R/marker-overlap.R
9145df4e6956ae97a47e89c00b99a6b0 *R/shiny-app.R
531fd9ae803174d89f9e61295fa3d7d3 *R/shiny-comparisons.R
5a59802088cbfbabffcba4d43bf72efa *R/shiny-feature-stability.R
ab9bd9aeeb862eaddf4bf005d422d80c *R/shiny-graph-clustering.R
f503d6e4515eeca42d8f90c4cdfed450 *R/shiny-graph-construction.R
5469c1b8992e94a5627521dbd5b2434d *R/shiny-info.R
cb011c72bb3f20e585a729fcc30d2a05 *R/shiny-landing-page.R
a380b550e39ffb830f3ae89013cc4669 *R/shiny-sandbox.R
6dd19c08dbe5b4c678aae1e891606fdf *R/shiny-utils.R
6011999cc0e1184b7a614c885ed9d78c *R/stability-1-dim-reduction.R
e16e34c3d2c7bcde12685a76148269fb *R/stability-2-graph-construction.R
fe7408b5b37ec55c700d638bc1f84cd9 *R/stability-3-graph-clustering.R
d9b9b18291e9f97effc44c3abb28aa55 *R/stability-based-parameter-assessment.R
a072619e609220a24799f88ab65a50af *R/utils.R
71d4c4dcd782a633d19db3de5b2ba3b9 *README.md
3c21344905bea2cc7ce917578a7fd175 *inst/CITATION
4a908b49732b4e3f2ff62f312b1d9053 *man/Clustering-class.Rd
50a248d70a3797ef95713b9a71608d6b *man/add_metadata.Rd
a42b2e5655955e7a5303bec6d7c96d7a *man/assess_clustering_stability.Rd
d3e580924f4b9d2bd8f9b0eff3abd7c6 *man/assess_feature_stability.Rd
b7f873ad71d9b2bf24db630b7cb4a9e6 *man/assess_nn_stability.Rd
4a8cb339f8db3fd1cbcc3576a22615d9 *man/automatic_stability_assessment.Rd
b7c9758619112be50604923687efff98 *man/calculate_markers.Rd
856d9db2e8691edd6bc771214df633d8 *man/calculate_markers_shiny.Rd
122ed98df68f3d860d2a6682ecc459bd *man/choose_stable_clusters.Rd
67c0054c398622a962ea0a2bb52a0df4 *man/consensus_cluster.Rd
f67b42ecbb61191c50f118b16b2dcc61 *man/create_clustering.Rd
3b559feb54e585ce740b8daaf95efe85 *man/create_monocle_default.Rd
3e52b28df1a0daef90045c29ea4818a7 *man/create_monocle_from_clustassess.Rd
6df2a78e4f0f0c34dec314d6b271216e *man/create_monocle_from_clustassess_app.Rd
0abed607810947efdd3a8243bc541f5b *man/create_seurat_object_default.Rd
a0ea95d184e297c0110062fbfc9b0a0d *man/create_seurat_object_from_clustassess_app.Rd
90dfaf1fd7cef1197428a7ccbe36dd0a *man/element_agreement.Rd
81804d44de7bbd0713b9ca03b8f7ae07 *man/element_consistency.Rd
d891a08b4a17056f0623349f32ffe4aa *man/element_sim.Rd
5596047080891691c12c38d31d1cda31 *man/element_sim_elscore.Rd
cf60032d3b9fabb9bce76462ae98e375 *man/element_sim_matrix.Rd
146f871b845bb346ce5dc193a19f1d66 *man/getNNmatrix.Rd
b5dc691a7321bf18667b8df056869bdc *man/get_clusters_from_clustassess_object.Rd
60afeac29192f7b9d77b9049bd53edc0 *man/get_colour_vector_from_palette.Rd
83da99c1c19352985f26be9a0769219c *man/get_highest_prune_param.Rd
77190e16ef9c25b9049a133fb52cbb11 *man/get_highest_prune_param_embedding.Rd
300ac7171d86b28cb34e1f98dfdfeefa *man/get_nn_conn_comps.Rd
463dc8e13446d38acafb6ef1c895b292 *man/length-Clustering-method.Rd
1603a6da7f2bcd3aed206cbd8c6c9d8a *man/marker_overlap.Rd
85cd997e03bb08f1ca5c4b5865e7d4f5 *man/merge_partitions.Rd
6d27baa3506dbf2dc07522a7f80973ad *man/merge_resolutions.Rd
4a96d4fa3fc39b58162b92a42239a2a6 *man/pac_convergence.Rd
2ef611c05430249a718ca0d159b98706 *man/pac_landscape.Rd
5d1d700fe6197a68ed0adcd4de9e8ee1 *man/plot_clust_hierarchical.Rd
88bd3949115fe8dce878294ba8e48959 *man/plot_clustering_difference_facet.Rd
dc04aa5b3367176f08424e3d2f803918 *man/plot_clustering_overall_stability.Rd
de8322b03b2a764e73fad88178bb862c *man/plot_clustering_per_value_stability.Rd
0b395d41df6fd956a20cf377892e9936 *man/plot_connected_comps_evolution.Rd
a463e5f09bbebfe01bc1710866467b3a *man/plot_feature_overall_stability_boxplot.Rd
997bd7b23b9f378f27a5d0b68972e70e *man/plot_feature_overall_stability_incremental.Rd
2a74a58f02a967be1f1722fb4c98c8cd *man/plot_feature_per_resolution_stability_boxplot.Rd
dfe381ed71b56f876f1a90f812c27cda *man/plot_feature_per_resolution_stability_incremental.Rd
9739a91c36115a79071f59190182b890 *man/plot_feature_stability_ecs_facet.Rd
6ceb71192377c84517956a753b7ccb01 *man/plot_feature_stability_mb_facet.Rd
e5c1bc5778e342e9791ef8408f918301 *man/plot_k_n_partitions.Rd
5d523808f17a6e9292527209b1f00590 *man/plot_k_resolution_corresp.Rd
74cabf309a8a30ab4baf66e07492f400 *man/plot_n_neigh_ecs.Rd
55a992091e5b448a0b819511b23378c3 *man/plot_n_neigh_k_correspondence.Rd
6e39350fc2e2fc06bb38e749ffa22b3a *man/print-Clustering-method.Rd
b6f6ec86091c62f83cac92536f0a4ae7 *man/server_comparisons.Rd
a067dd5290aa4a3d88346971709aac8d *man/server_dimensionality_reduction.Rd
627a6694c2e49668c05e3b6be30b138c *man/server_graph_clustering.Rd
6165fc664eeca15c8aaca1f56836738e *man/server_graph_construction.Rd
cadfb9c0816169464bda457f38acc967 *man/server_landing_page.Rd
09c76e44be5bb59a6c67c2686e80c037 *man/server_sandbox.Rd
b93640626029b9cba950d2b9043a4dd9 *man/ui_comparisons.Rd
3f6c82102d30a801ace8d98fcd34caf7 *man/ui_dimensionality_reduction.Rd
06a53947f382c32eb2df47bc22854492 *man/ui_graph_clustering.Rd
f54291314a40d7a112b04b3dad5aa621 *man/ui_graph_construction.Rd
a5c592cdea6250e73788973d8e219a42 *man/ui_landing_page.Rd
14cf77d227b0ba8a2ba7bc313fd135d7 *man/ui_sandbox.Rd
ac9a3385dabb18fe3d84ce3c85f55a39 *man/weighted_element_consistency.Rd
cf805cc7bdb8fd6187eb19706ec8db72 *man/write_objects.Rd
300459093985d32efbce1eede7d5e03c *man/write_shiny_app.Rd
9c42d3b97b43caf542f915ba1f390b25 *src/RcppExports.cpp
70742b5124ffa87c7f5bfb73e6ddb9b4 *src/calculate_ecs.cpp
93c95462c01277247c97e577b032bfc3 *src/calculate_pac.cpp
81cfbc16cba7a3d4e1bfbdba8f827348 *src/optimise_snn.cpp
ca9dc2c743015390fe29b1064b49f551 *src/update_connectivity.cpp
4dd80c6042e03044b12d3c7486f9314f *src/wilcox.cpp
61e1d1b193afcd99b0a3faa05cf9427c *tests/testthat.R
e522d11f6ff83eca81ccf98a15db5cf0 *tests/testthat/test-ECS.R
