58e96879419682ef908ae5a8ed20f072 *DESCRIPTION
cf6dbea66dd0592821a4ad634fbd6a33 *NAMESPACE
22d8375e73178ebb44f02d08251e8804 *NEWS.md
da88a623b24eea758e4be802f170289b *R/append_section_to_ini.R
4f4c25f693380574749fe5d659d16db1 *R/cpg_analysis.R
37c305cefaf615063e15cb6afdf318d1 *R/createManhattandQQ.R
c4ce6e437a3ee4f7f7983de0bfcceb3d *R/helper_collapseTableByLevenSim.R
4dbe0f8a98505da0337ba0f1b5afba60 *R/helper_getMaxLevenSimCol.R
212bc9a554a5a1514fe5a3867dab0d00 *R/helper_makeBigTableFromListOfTables.R
001fe3290c9a1a5a85f157cc496a2e39 *R/plot_HOMERTFs.R
ee0b200a959adfa6ff864adcba5d9d1a *R/read_bed.R
afb870261b58795811845c61cc36ef03 *README.md
8bb9f3171cd07eaf7f229df5ca7ef36c *inst/extdata/config.ini
7fcd1073b756bb3d02f78231a62751e0 *inst/extdata/cov5root_12hr_gain.CpGcount.txt
aa69a99798f30a0ff35cd913f284db9c *inst/extdata/cov5root_12hr_gain.nucOutput_gc.txt
50afa751f5cbc2676e2bfcf8638a7492 *inst/extdata/cov5root_6hr_gain.CpGcount.txt
4d46d4869507983ffe8157f2770211d9 *inst/extdata/cov5root_6hr_gain.nucOutput_gc.txt
9c109ed1f7eb6ce4819721981b72b34d *inst/extdata/createManhattandQQ_example_highlights_file.txt
8e2e74a75860ceda7baa4b44ba86d6b7 *inst/extdata/createManhattandQQ_example_sum_stats.txt
598caded036ab130845e80c825aef491 *inst/extdata/test_BED3.bed
82d83178dcec533dd827bf0a72838e4f *inst/extdata/test_BED3_badChrCol.bed
1b3075955c87d4193f28ad87639cfc35 *inst/extdata/test_BED4.bed
c2f1f05b44adfaed20df6f6a65d816e4 *inst/extdata/test_BED6.bed
b0830bef1d9ca3b44829622bec362915 *inst/extdata/test_BED6_nonstandard456Cols.bed
51d9f96078f53c9aa744eb09199a8dfd *inst/extdata/test_BED8.bed
49cb88fbaab5216e8d17ab7600bc09c3 *inst/extdata/test_HOMER/cluster1.knownResults.txt
8297310b63596842edf773b085e821c6 *inst/extdata/test_HOMER/cluster2.knownResults.txt
aa1e0a20ce5936b0726489a538f5bdf1 *inst/extdata/test_HOMER/cluster3.knownResults.txt
64524433db504407b2b24cd3c6540b46 *inst/extdata/test_HOMER/cluster4.knownResults.txt
eb210cc3fea4e4e917d3fc4f78e4f808 *inst/extdata/test_HOMER/cluster5.knownResults.txt
44c951301a5c8927b27f8a0f394b15a4 *man/append_section_to_ini.Rd
be7ed033fa5ad7b91f302896b126ff77 *man/cpg_analysis.Rd
4d64d6d29b90886a6f670a2bcd118d24 *man/createManhattandQQ.Rd
e4600341e4799d6f703ef6fe9dfbb066 *man/helper_collapseTableByLevenSim.Rd
6d5b8e5dfbcfc19fc91b19f34b7e9af4 *man/helper_getMaxLevenSimCol.Rd
e829cd43ee15791f4e80b67d6a149d19 *man/helper_makeBigTableFromListOfStandardTables.Rd
e419da8d559a43f633d761a5dd9697bb *man/plot_HOMERTFs.Rd
de4eca3392fab569f218d7d988875a01 *man/read_bed.Rd
