b2e1e323a45ce9495907ad9a3c7a371d *DESCRIPTION
25b3125a452d481c54cb5a01d9377375 *LICENSE
c8b09515851989291f80b90b92c03ba5 *NAMESPACE
b74736ef0624e3630a7d20b224ffbb97 *NEWS.md
66a1767b7d2f06673fe22e8a4f3fec4f *R/cloneRate-package.R
f0b9454d128c92afbc59821fc42decef *R/exampleData.R
cbad8c8c56c3b512e4d8e8f374f396e0 *R/growthRateMethods.R
a14e911a23324b1483ca1b46f0e86d77 *R/realData.R
6d59899a6ce794ff9c2e374f81fdb6ba *R/simTrees.R
13f41b630c5f6984f0fbc5025fbc31fd *R/siteFrequency.R
8583348952ffca2a24b74cfa5e671c2d *R/stanmodels.R
99c3b98e4d4ad97c8484e3b34267303a *README.md
d668f366ba5805a35c45a721bb96807c *build/vignette.rds
7e297a31e37e77c201a2bacff2f979eb *configure
5fdedca26c8830d7bb06aa1c4a634204 *configure.win
e9b4f01f4751b26754a8a0c25851c137 *data/exampleMutTrees.rda
8b3015799a2cab1ac8616ef928795d19 *data/exampleUltraTrees.rda
cfcf3831dbffcd4b30dddf87ac22ec54 *data/longitudinalData.rda
5b5af46bbab76501244238bbfb50e733 *data/realCloneData.rda
77a231cfda77d8daee9bd86a1c483f76 *inst/CITATION
e7a77e09d1495547c2e4f19d366e2e46 *inst/doc/cloneRate-dataAnalysis.R
0cd16e9a519af1f2c8f52d38a43ab076 *inst/doc/cloneRate-dataAnalysis.Rmd
393a1b99bb34f7cdf3fb592064bd262b *inst/doc/cloneRate-dataAnalysis.html
06bfaaa19c6024fc7b79264b880c98e8 *inst/doc/cloneRate-simulate.R
1dd35a736725e161017375ce800e5cca *inst/doc/cloneRate-simulate.Rmd
72687009d5a1ad78b8d06d15faaf5764 *inst/doc/cloneRate-simulate.html
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
5c806d992d4b197ba7feb9cdf6894366 *inst/stan/bdSampler.stan
3544c86b4f59d2d0c042f2325b962561 *man/birthDeathMCMC.Rd
02966cee9fb513c32e60c88973cfbd41 *man/cloneRate-package.Rd
693fee2154e050afc8e900831e045f5c *man/coal_to_tree.Rd
00f2553fac82e622f98066b195d9ab3c *man/exampleMutTrees.Rd
22ac7973bb8e576c648c560806379d1d *man/exampleUltraTrees.Rd
d19ee4c637a99fc42a539cd2378d34a7 *man/figures/README-getSubclone-1.png
6fb5b9275119847c5d76125d8e7ccbbd *man/figures/README-plotExample-1.png
8fd74c06e4a0f02c1d759e367b4e1564 *man/figures/README-plotTree-1.png
419584a762ecf229b02e01e5d1e019fb *man/figures/README-realDataExample-1.png
39390288330a416296d139314998beaa *man/figures/README-simPlot-1.png
7fd66cc0365b94336d0ee63c7d16baa4 *man/figures/logo.png
cc7f9308eede14bf1d6c854d770907b3 *man/inputCheck.Rd
90d0c46d2a3f7bc70d701ef441ea0b95 *man/internalLengths.Rd
9e61b8a279ae13affacd09109a330bdd *man/longitudinalData.Rd
c2a232c8659d035a3265a116d7de0ddc *man/maxLikelihood.Rd
cb144fae4c1ff5c37f1ff8f19405fcad *man/realCloneData.Rd
b14993872d662c09eb18030107f5b10a *man/sharedMuts.Rd
0f2aad6457b11ec73c46f3186b57e4df *man/simMut.Rd
e3338ab466fc354b8875313748a6c13e *man/simUltra.Rd
b1b7a9d325731ddd83f035717505a7ce *man/siteFrequency.Rd
c517c53f794f33173d56c26ee6aa67cf *man/ultra2mut.Rd
564c40d0e86bb1e58d039ff240e97b9f *src/Makevars
4fa4b88ae666192ae5f0d3e713d42b25 *src/RcppExports.cpp
75e6b0bb7b688949a48e0501b8e5ee74 *src/stanExports_bdSampler.cc
aff5a5d892d7587c2d995dd457eec068 *src/stanExports_bdSampler.h
89d9de05c70993436e63bb9d7fecf6a1 *tests/testthat.R
2ae7da37e54650c739a4510ece5bf071 *tests/testthat/test-growthRateMethods.R
e830ab43cf7adb5afa8a042c3982a307 *tests/testthat/test-simTrees.R
f457e6e149230051afd2d964d6a01acb *tests/testthat/test-siteFrequency.R
0cd16e9a519af1f2c8f52d38a43ab076 *vignettes/cloneRate-dataAnalysis.Rmd
1dd35a736725e161017375ce800e5cca *vignettes/cloneRate-simulate.Rmd
