% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plot-transitions.R
\name{plot_alluvial}
\alias{plot_alluvial}
\title{Plot Alluvial Diagram}
\usage{
plot_alluvial(
  x,
  from_title = "From",
  to_title = "To",
  title = NULL,
  from_colors = NULL,
  to_colors = NULL,
  flow_fill = "#888888",
  flow_alpha = 0.4,
  flow_color_by = NULL,
  flow_border = NA,
  flow_border_width = 0.5,
  node_width = 0.08,
  node_border = NA,
  node_spacing = 0.02,
  label_size = 3.5,
  label_position = c("beside", "inside", "above", "below", "outside"),
  label_halo = TRUE,
  label_color = "black",
  label_fontface = "plain",
  label_nudge = 0.02,
  title_size = 5,
  title_color = "black",
  title_fontface = "bold",
  curve_strength = 0.6,
  show_values = FALSE,
  value_position = c("center", "origin", "destination", "outside_origin",
    "outside_destination"),
  value_size = 3,
  value_color = "black",
  value_halo = NULL,
  value_fontface = "bold",
  value_nudge = 0.03,
  value_min = 0,
  show_totals = FALSE,
  total_size = 4,
  total_color = "white",
  total_fontface = "bold",
  conserve_flow = TRUE,
  min_flow = 0,
  threshold = 0,
  value_digits = 2,
  column_gap = 1
)
}
\arguments{
\item{x}{Input data in one of several formats:
\itemize{
\item A transition matrix (rows = from, cols = to, values = counts)
\item Two vectors: pass \code{before} as x and \code{after} as second argument
(contingency table computed automatically, like chi-square)
\item A 2-column data frame (raw observations; table computed automatically)
\item A data frame with columns: from, to, count
\item A list of matrices for multi-step transitions
}}

\item{from_title}{Title for the left column. Default "From". For multi-step,
use a vector of titles (e.g., c("T1", "T2", "T3", "T4")).}

\item{to_title}{Title for the right column. Default "To". Ignored for multi-step.}

\item{title}{Optional plot title. Applied via ggplot2::labs(title = title).}

\item{from_colors}{Colors for left-side nodes. Default uses palette.}

\item{to_colors}{Colors for right-side nodes. Default uses palette.}

\item{flow_fill}{Fill color for flows. Default "#888888" (grey). In
multi-step and individual-tracking plots, ignored when \code{flow_color_by}
is set; simple two-column aggregate plots use \code{flow_fill}.}

\item{flow_alpha}{Alpha transparency for flows. Default 0.4.}

\item{flow_color_by}{Color flows by state. For multi-step aggregate flows,
use \code{"source"} or \code{"destination"}; for individual trajectories,
\code{"first"} and \code{"last"} are also supported. Default NULL uses
\code{flow_fill}; simple two-column aggregate plots ignore this argument.}

\item{flow_border}{Border color for flows. Default NA (no border).}

\item{flow_border_width}{Line width for flow borders. Default 0.5.}

\item{node_width}{Width of node rectangles (0-1 scale). Default 0.08.}

\item{node_border}{Border color for nodes. Default NA (no border).}

\item{node_spacing}{Vertical spacing between nodes (0-1 scale). Default 0.02.}

\item{label_size}{Size of node labels. Default 3.5.}

\item{label_position}{Position of node labels: "beside" (default),
"inside", "above", "below", or "outside".}

\item{label_halo}{Logical: add white halo around labels for readability? Default TRUE.}

\item{label_color}{Color of state name labels. Default "black". Applied to
multi-step and individual-tracking plots; simple two-column aggregate plots
use black external labels and white inside labels.}

\item{label_fontface}{Font face of state name labels ("plain", "bold", "italic",
"bold.italic"). Default "plain". Applied to multi-step and
individual-tracking plots; simple two-column aggregate plots use fixed
label font faces.}

\item{label_nudge}{Distance between node edge and label (in plot units).
Default 0.02. Used by multi-step and individual-tracking plots.}

\item{title_size}{Size of column titles. Default 5.}

\item{title_color}{Color of column title text. Default "black". Applied to
multi-step and individual-tracking plots; simple two-column aggregate plots
use black titles.}

\item{title_fontface}{Font face of column titles. Default "bold". Applied to
multi-step and individual-tracking plots.}

\item{curve_strength}{Controls bezier curve shape (0-1). Default 0.6.}

\item{show_values}{Logical: show transition counts on flows? Default FALSE.}

\item{value_position}{Position of flow values: "center", "origin", "destination",
"outside_origin", "outside_destination". Default "center".}

\item{value_size}{Size of value labels on flows. Default 3.}

\item{value_color}{Color of value labels. Default "black".}

\item{value_halo}{Logical: add halo around flow value labels? Default NULL
(inherits from \code{label_halo}). Applied to multi-step and
individual-tracking plots.}

\item{value_fontface}{Font face of flow value labels. Default "bold".
Applied to multi-step and individual-tracking plots.}

\item{value_nudge}{Distance of value labels from node edge when using
"origin" or "destination" positions. Default 0.03.}

\item{value_min}{Minimum count to show a flow value label in multi-step and
individual-tracking plots. Default 0 (show all). Simple two-column
aggregate plots show all nonzero value labels when \code{show_values = TRUE}.}

\item{show_totals}{Logical: show total counts on nodes? Default FALSE.}

\item{total_size}{Size of total labels. Default 4.}

\item{total_color}{Color of total labels. Default "white".}

\item{total_fontface}{Font face of total labels. Default "bold".}

\item{conserve_flow}{Logical: should left and right totals match? Default TRUE.
When FALSE, each side scales independently (allows for "lost" or "gained" items).}

\item{min_flow}{Minimum flow value to display. Default 0 (show all).}

\item{threshold}{Minimum edge weight to display. Flows below this value are
removed. Combined with \code{min_flow}: effective minimum is
\code{max(threshold, min_flow)}. Default 0.}

\item{value_digits}{Number of decimal places for flow value labels and node
totals. Default 2.}

\item{column_gap}{Horizontal spread of columns (0-1) for multi-step and
individual-tracking plots. Default 1 uses full width. Use smaller values
(e.g., 0.6) to bring columns closer together.}
}
\value{
A ggplot2 object.
}
\description{
Creates an alluvial (Sankey) diagram showing aggregated flows between states.
This is an alias for \code{plot_transitions()} with aggregated flows (default).
}
\examples{
mat <- matrix(c(50, 10, 5, 15, 40, 10), 2, 3)
rownames(mat) <- c("A", "B")
colnames(mat) <- c("X", "Y", "Z")
plot_alluvial(mat)

}
\seealso{
\code{\link{plot_transitions}}, \code{\link{plot_trajectories}}
}
