% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/disparity.R
\name{plot.tna_disparity}
\alias{plot.tna_disparity}
\title{Plot Disparity Filter Result}
\usage{
\method{plot}{tna_disparity}(x, type = c("backbone", "comparison"), combined = TRUE, ...)
}
\arguments{
\item{x}{A tna_disparity object.}

\item{type}{Plot type: "backbone" (default) or "comparison".}

\item{combined}{Logical: when \code{type = "comparison"}, controls whether
the original vs. backbone panels are arranged in an internal 1 x 2 grid
(TRUE, default) or drawn into a layout the caller has already
configured (FALSE — pair with \code{\link{panel_layout}()}). Ignored
for \code{type = "backbone"}.}

\item{...}{Additional arguments passed to splot.}
}
\value{
Invisibly returns the value from the underlying \code{\link{splot}}
call. Called primarily for the side effect of producing a plot.
}
\description{
Plot Disparity Filter Result
}
\examples{
mat <- matrix(c(0.0, 0.5, 0.1, 0.0, 0.3, 0.0, 0.4, 0.1,
                0.1, 0.2, 0.0, 0.5, 0.0, 0.1, 0.3, 0.0), 4, 4, byrow = TRUE)
rownames(mat) <- colnames(mat) <- c("A", "B", "C", "D")
disp <- disparity_filter(cograph(mat), level = 0.05)
plot(disp)

}
