9f69de5fb8273d54dda856fe4ba628da *DESCRIPTION
df7a980791243a3f0fee282a8b585b51 *NAMESPACE
9388ef950a28996a966a3effe108164c *NEWS.md
d968ba7c10051baca76adb6d6bd51363 *R/00-AllClasses.R
fbe74c071c3dbd12caba94b147888cba *R/AllGenerics.R
1f1459274ddcc62642c2cf479055dc72 *R/RcppExports.R
e3f2eb45f9cc82d4351c541560d71b35 *R/accessor.R
d9df35c454876a40dda01454cf0bc3d1 *R/bayes_enrich.R
1f7b4e1377524d8a8e0161cf4a1de515 *R/enrichit-package.R
0300b73fdba5fb2f21621082ec7cbbba *R/gsea.R
604f6318353e9bc704469b43ea1df9fd *R/gseaScores.R
ba4c77a978a17459af8281c22c4abb73 *R/gsfilter.R
d0772f742126bd6719b6236a0f7ac638 *R/mnsea.R
8a2bee85da8a43c72419bbad1f256fd1 *R/mnsea_contribution.R
c40d326e68b1e6027c21eb1adc7ff567 *R/mnsea_subnetwork.R
2ed39a2305333f3136c9b316bee4d66f *R/multi_omics.R
b0032c8543a57304ea1cafe62beb854b *R/nsea.R
1d6bdca724a6e6ce72b8254df3d8bd66 *R/omics_contribution.R
a5178990ba65abc30b7afc085e4a1ff4 *R/ora.R
eafbc7a0ea93029513a0080f4239f1d4 *R/ora_gson.R
38b45d09d24fe5010758cd13a9d1ad15 *R/print.R
b7eccf17b69174f7c675ed653251bf97 *R/setReadable.R
e0af2385772882e4c888cbe9350fb8f0 *R/utilities.R
5618b31c21bdf2fc71f090f2b2b4a263 *README.md
6af8e7644a2c366a25339b1923c9a048 *build/partial.rdb
31aff434bb9ffc181ae21fa0ad2d1713 *man/EXTID2NAME.Rd
4d9ac221fc627d01f07744b135d2d5fa *man/aggregate_enrichment.Rd
aa1fd39b3605e7121f756e888ead319a *man/aggregate_omics.Rd
b38a306f6aeedfc0395c69b47c05b883 *man/bayes_enrich.Rd
dad79b50fd9176189c029a52e6393e1e *man/bayes_summary.Rd
427da8c5b26c47cb0b301fc70d812066 *man/classify_omics_pattern.Rd
01ea244fda317c3ed1e462fa9267a45a *man/collapse_multilayer_scores.Rd
8c0bc73fc16768c0a7abf081129793ef *man/compareClusterResult-class.Rd
fe1263d4b031848a5640a9c42037dcc1 *man/enrichResult-class.Rd
d2e8523f45aa834b2762f58c6b26318d *man/enrichit-package.Rd
dc42827020955c83421977259850da26 *man/enrichit_params.Rd
b8fab96c3e7941cd0e046c22fec1024a *man/extract_mnsea_subnetwork.Rd
5755e37ef3bcf0c66cd04e85d899406a *man/geneID.Rd
bbe0cbc7022cdea7f514a2b01abe0fe7 *man/geneInCategory.Rd
4b6baa2e2d6dc4164713cb37ac1addeb *man/get_mnsea_contribution.Rd
a59682c56f26864d371d1c38e14515db *man/get_omics_contribution.Rd
824d17d68298d503f20a90d0f6606fec *man/gsea.Rd
c01a59b11ef5391e2b57abbf7f81d084 *man/gseaResult-class.Rd
1707f84bf88c534d7c2c19472ef475c5 *man/gseaScores.Rd
fce863270320b3e4afb677386276233d *man/gsea_gson.Rd
38ed12a59a9c333f8b9b5cb695c16f20 *man/gsfilter.Rd
7c2967dca8d39e388e54bd96b1d19f67 *man/harmonize_ids.Rd
286c0f57ce0372ffd605279e78bcbcda *man/mnsea.Rd
f8880999efd3a66c771834d7ed3e48a1 *man/mnseaResult-class.Rd
5f91fe4358c7b07230835467fef72ab4 *man/mnsea_gson.Rd
34872f79231f40b70d99aa8738094830 *man/nsea.Rd
6cde331c401964d8e138609734b34a2a *man/nseaResult-class.Rd
1290d2f9915731807b76f26473750a14 *man/nsea_gson.Rd
94fc5ed4dff6cc767e9e83bc044c52b4 *man/ora.Rd
d4abb8320ee53c6dec413d108002bd26 *man/ora_gson.Rd
c2a922fe2eb0772c5d0e8795bfa2a9f6 *man/prepare_multilayer_network.Rd
780732a819a8f9d9613b26d5df82cf17 *man/prepare_network.Rd
718b8f9cdfb75522c6693dd70470a129 *man/propagate_multilayer.Rd
77deda36be5805e1c4496ce9362c6b80 *man/select_features_for_ora.Rd
ba23999379a151ddae7a70db54b9e75a *man/setReadable.Rd
153baf5c3f007b8a9e9c5e0188d101de *man/show-methods.Rd
e1f02897eb9ca6340479673af85bd6b2 *man/summary-methods.Rd
0699ee02a6db0df39815e8583e7e9a96 *src/RcppExports.cpp
577fb0ecebecc939ebdf814354be93b0 *src/enrichit.cpp
14ae1b07a1b489adfb661d7b9f2a619f *src/enrichit.h
4cae714b641eac247695b86c4054a765 *src/esCalculation.cpp
aa9c061c8d8f40f49e28f7cb17c4e6e9 *src/esCalculation.h
f4c738870b447cae56192ed684d76ae5 *src/gsea.cpp
2eb9821ad96f42bf14fa3cb514de84b5 *src/gsea_multilevel.cpp
08983688836774363c5df3e988c328a4 *src/gsea_multilevel.h
c277f0f995f74e162b9964e5a4672500 *src/gsea_multilevel_util.cpp
ff4c18584217a57e0872644eca828609 *src/gsea_multilevel_util.h
a59765fa2dcd0335812e454683c32959 *src/gsea_scores.cpp
ff9400c8ee1a77652c90e83755c904d5 *src/nsea.cpp
9616c1e5b831d5b3a0ee1859e2b648db *tests/testthat.R
30680c68e8a5a8bf1fdfeb76a19e29d4 *tests/testthat/test-accessors.R
429a478dd17cea538717a5fe64e2d4ae *tests/testthat/test-bayes-enrich.R
ca45b5a1bdb4612fb1926f5fbfa86733 *tests/testthat/test-gsea.R
fe32496416db1b9568b56dd8f879e83c *tests/testthat/test-gson-helpers.R
72bd2a7dcd77024235fcae499bdd34f9 *tests/testthat/test-mnsea.R
90fc8c50cc85c5fd7260b9ef44b2991b *tests/testthat/test-multi-omics.R
1cd0c6b3588262521f2d448a1dce0e4f *tests/testthat/test-nsea.R
9bf70fd941c9967fbfed643a8f765df6 *tests/testthat/test-ora.R
a3ea65b28686cd289ecf191e9e71bc14 *tests/testthat/test-qvalue.R
