e969d12ac98361a27aacfc6af641d4bd *DESCRIPTION
b991db1951fb867c58949418e5f4335c *NAMESPACE
b0ace883c09331544938a9c765fef82f *NEWS.md
b2a7d916017650e806f04c58903bdc9d *R/RcppExports.R
523cc8d4c32a7d3c0fe18b1533367934 *R/calc_K.R
084ab97657c67cef97257f415c839419 *R/calculate_MAT.R
56c7f8bf3c5ad87ec73585bba6a9ee58 *R/calculate_error.R
3a3ee727e634298171c4469e58f01649 *R/estimate_time.R
6574ee4abc9958a85af2ae94cf46fe48 *R/estimate_time_diploid.R
901a840761ce022e610d672034ea0ea9 *R/estimate_time_haploid.R
ddf9cc7a1651ae0d553635f0ce0aaac8 *R/estimate_time_one_chrom.R
938d12bf372d0fd94332337d3b5546c4 *R/log_likelihood_diploid.R
f8f765820d8ede1e5a1a0345e37b6153 *R/log_likelihood_haploid.R
3c9673a07b38b675096d5ff53f12b8fc *R/number_of_junctions.R
374206027f1c6cb6244d9ece0c185d4a *R/number_of_junctions_backcross.R
3a2dd21826354feb60f119b04b5510de *R/number_of_junctions_di.R
336dbb6a31f658db7780512e40700b39 *R/number_of_junctions_markers.R
f182c67430b04257b5c00b9b80dcb14a *R/sim_backcrossing.R
58f2324ec63cb36091bafff29e4b3536 *R/sim_fin_chrom.R
31962009126309238bee547ed8542c74 *R/sim_inf_chrom.R
88db5edbcffddf0d47317d60bee46b58 *R/sim_phased_unphased.R
0ce3d4ce8d14224ffc708c63ab606868 *R/util.R
e3bb47e59b8730ba3ec1a4b0e1aea018 *README.md
41914702a54d6abe1a68af47a9b21efb *build/vignette.rds
11a2212a8cbba1d1705a056ce52fe194 *inst/CITATION
9f4c1c76bc7563f3721440b55b72dc71 *inst/doc/Overview_of_the_junctions_package.R
6726c25acfe19abdc1490e2f4f798aad *inst/doc/Overview_of_the_junctions_package.Rmd
05fc81cb3bf92d30273b843d1b6cebca *inst/doc/Overview_of_the_junctions_package.html
59034db3af14349b1bc7cc3a7c5a1222 *inst/doc/junctions_vignette.R
1bd2cfeb37202fc6b12a51d07466acd7 *inst/doc/junctions_vignette.Rmd
2717b1cda6d86984c0920559bf7fb3f3 *inst/doc/junctions_vignette.html
82d1106c789c925d8cbe0e928a9d199c *inst/doc/phased_and_unphased_data.R
e5e7ea4037448b75d14a0fce791f1670 *inst/doc/phased_and_unphased_data.Rmd
a65f0381801fbe2ba283723623d809a6 *inst/doc/phased_and_unphased_data.html
813d2d78f4bbf6a96c41ae88b989a7f5 *man/calc_k.Rd
ee2978930780dd020cd3cb199e0828b0 *man/calculate_mat.Rd
01791bf5425b9fdd062d3f2d6ef236f4 *man/estimate_time.Rd
821c05352a1047bb7bec79852d115295 *man/estimate_time_diploid.Rd
7901e2c1f80559cbd7401217b05c92b8 *man/estimate_time_haploid.Rd
5509875d060bc6d47c8c19c7ee55abd1 *man/estimate_time_one_chrom.Rd
c4dd651be4b32cb88b49ba1085931d07 *man/junctions-package.Rd
5a0b5c8e71d17107e1a770592b1170e3 *man/log_likelihood_diploid.Rd
2143bede846e4947528c20c80d6b374a *man/log_likelihood_haploid.Rd
054c14c92c6729c2dd7c3f0f8c9e5290 *man/number_of_junctions.Rd
29564485fa8964caf07a030ff980355e *man/number_of_junctions_backcross.Rd
949916f851ebe49bb3f197871cefa4b3 *man/number_of_junctions_di.Rd
dd516c675a3315b301c97a5a59b956af *man/number_of_junctions_markers.Rd
f4e3d91cd395fe500b603dc78006d163 *man/sim_backcrossing.Rd
c4ba73712444b91f13b125f0ce505913 *man/sim_fin_chrom.Rd
1f42d0b94fa5b312ef03e8027973e82d *man/sim_inf_chrom.Rd
a94b5afcfe4e8a76da215c46fb6d094d *man/sim_phased_unphased.Rd
4c5753918aaac16743531597f50e66e4 *man/time_error.Rd
24e420a81f7f29ac6a5e7780eb281146 *src/Fish.cpp
cd0c231957aa8b24779164322b3208b6 *src/Fish.h
665033d0ef12525cb6de24862d3c8202 *src/Makevars
66fac2b02015d922d6e751e3a8a57074 *src/Makevars.win
1db2aaf4563c1c5bf24d2f10514e5c9c *src/Output.cpp
25c8bcce01d137ca7743b2ba53648998 *src/Output.h
c642e02468d4f1d74ef79320d9d6e453 *src/RcppExports.cpp
76114e3c2446ee43f63451de6c8e7418 *src/backcrossing.cpp
39e11c46f84a6808d7e4df8cce8d3c9e *src/estimate_time_unphased.cpp
37107eae50b6057d9c5bf6076b3010b3 *src/estimate_time_unphased.h
4502d772bb7fb45436fc4a2a35ac055b *src/main_functions.cpp
d3c3c08f4d0fd314f3abc8b1c2a2cef0 *src/random_functions.h
8913534109aa9e89defa9f13a21d0ce4 *src/unphased.cpp
d105b79b306041bf1e65c3d57569a559 *src/util.h
4d268dc5fa7ca05035425c8403f35f20 *tests/testthat.R
5fcb48d2368db39299bf9660a7be0e01 *tests/testthat/test-backcrossing.R
1846e203e64d69d0e6be8fe5bf1b00ac *tests/testthat/test-equations.R
497fa0b2bc6da437b68dcb6ff5b43143 *tests/testthat/test-estim_time_haploid.R
c205853c9d83ae4d6a92427433c82502 *tests/testthat/test-marker_dist.R
5278c8d257eb2ca69c1026be89f95686 *tests/testthat/test-one-chrom.R
662e1e1d67dfdd4cf22594d167fdc93d *tests/testthat/test-phased-error.R
18e5f2cd786c80105be9bdf8d93963df *tests/testthat/test-phased.R
6fd315b583b905075c8de18247fbbcf0 *tests/testthat/test-sims.R
9efc5de97ab7b44eaac12a3aebbe20ea *tests/testthat/test-unphased.R
6726c25acfe19abdc1490e2f4f798aad *vignettes/Overview_of_the_junctions_package.Rmd
1bd2cfeb37202fc6b12a51d07466acd7 *vignettes/junctions_vignette.Rmd
e5e7ea4037448b75d14a0fce791f1670 *vignettes/phased_and_unphased_data.Rmd
