dbc3da2f0663629d06e2a3d371b8f572 *DESCRIPTION
9b37b56816999aa6b18503334803abdf *LICENSE
ad949e61882be8daae66536cb0fac9d9 *NAMESPACE
2aa7424ebd5db8224560d60f80271371 *NEWS.md
fe56be9c53ee4067eda2792a20c1b713 *R/calc_change_in_ml.R
0cd2ad8da23a0ae7da81ba94a9689618 *R/calc_log_ml.R
7e4adcff4135c73b5b234fa515908a00 *R/hierBAPS.R
d4f0a15c017abf9ba700ed77b440cf56 *R/join_units_2.R
f682972f602e41bab22ad13fcf5cef13 *R/load_fasta.R
0d9cf44c809d123928c454c6ed336eea *R/log_stirling2.R
61ab9f9ff0d97e4a54d3365b5206ea31 *R/model_search_parallel.R
dcd81b1e8664bd87178482b60d4fa74c *R/move_units_1.R
d3a328bd4f9303f4f543f5f5f8a72aac *R/plot_sub_cluster.R
aba6b85c2b16aa6e4cd7dedde4ee0fc3 *R/preproc_alignment.R
c65c074615a0d544b6f3bf5b52bb5b9b *R/reallocate_units_4.R
a0bc456c6c458892945b8bebd4c34777 *R/save_lml_logs.R
ff13375b4d2f217bf1c8bfa47c0ffce9 *R/split_clusters_3.R
579de7a07b9bfb65fbc97468190d36ed *README.md
5e78ffd44efc54d8c9cb238feb02bf3f *build/vignette.rds
c88e01e4a6dc58e62b5c42585392b353 *inst/CITATION
b4ab22ee68185e8869d60415d202d984 *inst/doc/introduction.R
4bd26e7e9acb1726682191101eae3d71 *inst/doc/introduction.Rmd
fe25e788a3baf55e4e1c0f8ad323148a *inst/doc/introduction.html
04731d4ed4ed9c7537020ebea5f324c3 *inst/extdata/seqs.fa
173ffdde45b98157f1c33111f9a6c91d *inst/extdata/seqs.fa.treefile
0037061569879ab09563b0a84275d5d2 *inst/extdata/small_seqs.fa
9abed74ffa3fe4c60043bc4969369ba6 *inst/vignette-supp/unnamed-chunk-13-1.png
9abed74ffa3fe4c60043bc4969369ba6 *inst/vignette-supp/unnamed-chunk-14-1.png
7a6e179f16f8e9c1c20825113c1b8274 *inst/vignette-supp/unnamed-chunk-15-1.png
d06cb8f1f5bc54f1c6d8b6c18b795592 *inst/vignette-supp/unnamed-chunk-16-1.png
3ae51f22e7307cbfad15cc36fa7a3429 *inst/vignette-supp/unnamed-chunk-17-1.png
4e1747d012705ed7117ed7cb6f0f4b65 *man/calc_change_in_ml.Rd
c38d70b15162b37fa8c04215775addee *man/calc_log_ml.Rd
098c0da56f30b20c667b6044fefe875a *man/hierBAPS.Rd
216581c9fd20102839389b1c7a19e136 *man/join_units_2.Rd
e88efec7191f3f1d314cfe399e382cca *man/load_fasta.Rd
8b74ae38f6d415dee6c669594c463fc2 *man/log_stirling2.Rd
e6347302b6aee42844922d8928311c76 *man/model_search_parallel.Rd
4f630dfc95ac79e437e88119388ca217 *man/move_units_1.Rd
6501d4c2dc39110211a21d8dfadd3d3c *man/plot_sub_cluster.Rd
9fa930703ba94c525963845bd5134c95 *man/preproc_alignment.Rd
33a72b63e5cbcb2cac593c37816769fc *man/reallocate_units_4.Rd
ef3dd8df240c8f7dd6c601f185d8c3eb *man/save_lml_logs.Rd
37411376f7b6c691a010113b44bbcf8e *man/split_clusters_3.Rd
284599c9d118d91ad35d1c99c3873721 *vignettes/bibliography.bib
4bd26e7e9acb1726682191101eae3d71 *vignettes/introduction.Rmd
