4d667c48567b1c0bde554dc37098671b *DESCRIPTION
a0344bb134f2ae4da62282028f8831c5 *LICENSE
615f6fcdfbefe7b4297ee713eab84f8c *NAMESPACE
0b8956a743d3c6f58ba3a7022a929d5e *NEWS.md
67784de02fee0e73f2632cd3eab3758f *R/add_metadata.R
db9286831d65f482695abb43c8f1279f *R/assign_index_peaks.R
0b8591a3c15d2116ba703d4bbf7f0fe6 *R/calculate_instability_metrics.R
e86c87134e273c73dedbb589fbc27fbe *R/call_repeats.R
5d7b1bb3dfdfd43f759f3fd5d50c8729 *R/classes.R
ad77ee7c0e3cee3c7f8d14789fde5e28 *R/config.R
1e3bd54ff7ebb84e7209694ffed295c3 *R/constructors.R
5e379027b799a194257b0cde3936cb87 *R/data.R
915f6cd5996f9eb97643037fe3b99e27 *R/extract_functions.R
4747b2e31b30afe8c5fdf3d7a29e2385 *R/find_alleles.R
b87c039764f17bf5c2bb68e5d29e6cf2 *R/find_fragments.R
34f1708c8eb6afb7619f94a745b04a72 *R/find_ladders.R
7a3ce96048f1cfc8e9b123dc5f7868bf *R/fix_ladders_shiny_app.R
d76108a2b160ccfa299286804a948336 *R/main.R
2550ac71f081f76f4ae5b94fbf8659f2 *R/misc.R
357e2516a3f0f49a9c9cf92cf1a84303 *R/plotting.R
5e51e47ad82ca56fcd81467a7d71faa2 *R/trace-package.R
57e53cd8eb360fadecd9f0e0c2360d89 *README.md
9d5d57306c989a862d29353812d857e7 *build/partial.rdb
254fbb0194f24ad9b6b7645e1a06a7bf *build/vignette.rds
302379cd5d357406b53908b06481ae18 *data/cell_line_fsa_list.rda
a7bda66b6a5898bea67e262fe37c0fbe *data/example_data.rda
bd0318836c75f7e2fdfe1ecf4122540c *data/example_data_repeat_table.rda
c764c66e96623bf155f1b2a25390d9a1 *data/metadata.rda
fbb5090f70bc0d41574e126176d59d2a *inst/CITATION
cdcb83a241fa1f918085c4123d6920f3 *inst/doc/plotting_traces.R
470a6ebf0f780b6e1a3290b937ebdf58 *inst/doc/plotting_traces.Rmd
8478e30f8de0012f626681013cdacf80 *inst/doc/plotting_traces.html
281ff2d3288eef4a302c03963610724b *inst/extdata/trace_config.yaml
25318e8cb34bd5d7ea7d0693f28a47bc *man/add_metadata.Rd
41170d97173fa903a45bfc06d3985d5b *man/assign_index_peaks.Rd
c692a0ef43f6b1c34e390497dc8eb61c *man/calculate_instability_metrics.Rd
06529c80040efce62e235cea98c75c83 *man/call_repeats.Rd
975bff74f2509ee01a3fc7c8e3721cda *man/cell_line_fsa_list.Rd
08ad9033a30cb5e09ad646fdc7ad22dd *man/example_data.Rd
0fb19cd472f0afba7cb98f9a2930baf2 *man/example_data_repeat_table.Rd
bd3b395724d8219b26ec2969e509155b *man/extract_alleles.Rd
7080cb5606765cb111efab1938d38865 *man/extract_fragments.Rd
5e4f6bb18cbc1398fd33a6cf6e4b6c7f *man/extract_ladder_summary.Rd
f3e4bdefcab981cfa22bb1802500daf7 *man/extract_repeat_correction_summary.Rd
d6bc6c67dbd7399c949daf15c5f79ebe *man/extract_trace_table.Rd
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2c347aa85ec56eada0992f22fb8be8fa *man/figures/README-plot_ladders-1.png
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97d10893a550de7ed613939da26c6b88 *man/find_alleles.Rd
047573c50919b27e96519cfbdcebf834 *man/find_fragments.Rd
450c9f6a13478762222df6fb69fac543 *man/find_ladders.Rd
5f167a713d75b50fc3280f05b0def2c4 *man/fix_ladders_interactive.Rd
11fb892a0bf11f9c25e01cbff912db37 *man/fix_ladders_manual.Rd
1d9abd31ca10f1669c314f99c435bba6 *man/fragments.Rd
82b23745e361d13e9356b900640a4232 *man/genemapper_table_to_fragments.Rd
e9c5c272a53202763b79cf4727fbdc2e *man/load_config.Rd
c4e66cf385e25ece41ee26d2802c5cd6 *man/metadata.Rd
340e50cc41c6b575c3837d9907d0040c *man/plot_batch_correction_samples.Rd
faa600e96ea4feb2c9e2a4256b526283 *man/plot_data_channels.Rd
a99c8a9eaca4d31c7f4b94d115eb368e *man/plot_fragments.Rd
ef64602d7f33e219e5090dc79e0702d3 *man/plot_ladders.Rd
d56458a1a98431a42ffd1b0a400f2daf *man/plot_repeat_correction_model.Rd
516b7a2ef9fa5eee526879ed97c9fefa *man/plot_traces.Rd
7494f5489a297d47270b94f059a15535 *man/read_fsa.Rd
7551c1a6f151a268bd083eb71e252b9f *man/remove_fragments.Rd
ec3e8595f46db48f90f726a59375627a *man/repeat_table_to_fragments.Rd
02fba5c9026fa34ec15c016e911361c0 *man/size_table_to_fragments.Rd
8199c81b2f8cf3e4a8ac10c9cb3c72cf *man/trace-package.Rd
563c8a425a5bb146ff3d2ad4985e1d95 *man/trace.Rd
cafddcd2589c2d023befd01b88968237 *tests/testthat.R
ec60ae73c82131c9d95922150f47ca93 *tests/testthat/fixtures/test_config.yaml
b792c01395255bfa5010db547af581d2 *tests/testthat/test-add_metadata.R
00977a8feef24a4a01d1873aab2b96ce *tests/testthat/test-assign_index_peaks.R
1f9e18f0feb8f9d799b525d79ce973c7 *tests/testthat/test-calculate_instability_metrics.R
02a12b779d205bde56d3fc7eafaa815c *tests/testthat/test-call_repeats.R
e7d7339d9c4d89198641452d6dfa198d *tests/testthat/test-constructors.R
1db43dcd804cd4c8042b07dd20dc88a0 *tests/testthat/test-extract_functions.R
7b114f651106e6122accdb1709f340f7 *tests/testthat/test-find_alleles.R
3c157d207c0e843418b2dcdbe2640cf8 *tests/testthat/test-find_fragments.R
d9e942db92d914480546851f43ca12a0 *tests/testthat/test-find_ladders.R
970f173f99dce0c0aa37e16c209f9530 *tests/testthat/test-full-pipeline.R
b6300f26ca82e37a3377a1e8f9d82e44 *tests/testthat/test-main.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test-plotting.R
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/test-read_fsa.R
c90f9582f9fcbc3c3147b464855c9cc4 *tests/testthat/test-shinytest2.R
883618e63abf57a5b590dc4cbe35f0e5 *tests/testthat/test-trace_output.R
470a6ebf0f780b6e1a3290b937ebdf58 *vignettes/plotting_traces.Rmd
