7d4c100dc327a59fa587ee7c252cee1b *DESCRIPTION
d7143cd569f828b376a225dd4cb05953 *NAMESPACE
6081c0ed267de2d70ac820e57252ad66 *R/CNOGpro-internal.R
605459d44afeb11bb469b7ddfeeef9e3 *R/CNOGpro.R
0473e4e9941ab1f580f2b4d28be98d7c *R/HMMcopynumber.R
0c53bce19893c16d111c6674f8691f26 *R/addState.R
f145f578405fc1475ce1744dac9a284c *R/calculateProb.R
c2c48386b9b9d0c961ae9431b7e2d528 *R/copynumberBootstrap.R
235c26b2966bab43b6b7eaf581ac99f2 *R/getGCinwindows.R
b3aa739a51b991b33eeba29cf60fba17 *R/getMembership.R
f6063b5c11b7b44efad2a6de7a5426a7 *R/gethits.R
37b87d9f0c1d56aa7ba3b16ec0b448cb *R/getreadcounts.R
5feab062d6216c3dc8d7b3be9d622240 *R/getsequence.R
af754bbfe44735cedb10053fd98c3459 *R/insertRow.R
470d2b11e414156eda8dd135c02cd322 *R/isbetween.R
3495b99bfbc1b39bd08d7e9ba1d0fde5 *R/makeViterbimat.R
4472dec8c4600570e05595ae946590ee *R/normalizeGC.R
674384ebe480d4a9413eccfda181477e *R/plotCNOGpro.R
ae62420956b2bfcb3b7b16e7edd1d0e0 *R/printCNOGpro.R
bdde1dd129feecdcaaf6afba4c9b9a5a *R/readGenBank.R
ac471be5757427d88c322975e1e2f35d *R/rgammapois.R
2ebb6e6f793a02c599b72e31292d83cf *R/runBootstrap.R
9afb1bb610c14094c4b610e2f4abd5d3 *R/runHMM.R
f2772133fa6ad4e278f117864ea31a86 *R/sampleChromosome.R
286d20d39f6a6c92f654d01df95ca16e *R/setupEmissionMatrix.R
31359d8e812334d7b31f5245b30a9b63 *R/setupTransitionMatrix.R
3d52c4d96df3d2ce2d390172447be9b5 *R/solvePR.R
f5c883b534126e81385c2425141c94e3 *R/spans.R
ac6b532ec0ba38c008df6972c5822f98 *R/store.R
1cc8b719e92ab634cad047a8f9d5d0d8 *R/summaryCNOGpro.R
dcf756b1949da9ed82794c9f19e7ce7a *R/updateGeneTable.R
626aa75dcea6734c96af0f21bd3bb47d *data/carsonella.rda
e5fe9775525c49312f27baa7e0fbc44b *inst/extdata/CP003467.gbk
c21dac892643f349c0655276c34037dd *inst/extdata/carsonellahits.tab
e099471c059670aed9d4c45f4c6cf28e *man/CNOGpro-internal.Rd
8c308c163f90f042209fdc0ef15834cc *man/CNOGpro-package.Rd
6a0be4d1dc0a6864992b1e5eb92761ea *man/CNOGpro.Rd
c3cdfcc2d55ade0805d2a3c6c363ee01 *man/carsonella.Rd
5f0467566b2ebe6a3fe67408919e013a *man/normalizeGC.Rd
2723b74e5132ab1a5bd9455d3f789d19 *man/plotCNOGpro.Rd
dc33b87d67f0a43e2630c052a5f9a0c8 *man/printCNOGpro.Rd
ab9fa29b7e046fa86080a9e068fee0c0 *man/runBootstrap.Rd
6c9029773383d90a63ac9a91db1abfa0 *man/runHMM.Rd
0e3b535e688ec962d9ab44439222fed7 *man/store.Rd
d9d7e9b31a82f52c2b92b238abca16f6 *man/summaryCNOGpro.Rd
