2e20f688b8ed2b50116068085c9d1cbd *DESCRIPTION
862cb865f37968b2db3be10048878b80 *NAMESPACE
6afebaea9766eaffe89cdfcd7500e233 *R/Script_PLATE_01_CREATE_MARVEL_OBJECT.R
933a3d06e826fc885047ccb18db77bbc *R/Script_PLATE_02_DETECT_EVENTS_0.R
c688fa005ab7a2d9aa63306033081fe9 *R/Script_PLATE_02_DETECT_EVENTS_1_0_ALE.R
cf5beb1ed8b9c42fa35aed491382503f *R/Script_PLATE_02_DETECT_EVENTS_1_1_ALE_PosStrand.R
2ca08436cb7eda6212d5f6c9566d3c78 *R/Script_PLATE_02_DETECT_EVENTS_1_2_ALE_NegStrand.R
765a9b01d9456df7cd70fc17d6534c4b *R/Script_PLATE_02_DETECT_EVENTS_2_0_AFE.R
1b3d3561719b612165253c0bf829b560 *R/Script_PLATE_02_DETECT_EVENTS_2_1_AFE_PosStrand.R
05a4cf9c8525600b2b51e0f740684306 *R/Script_PLATE_02_DETECT_EVENTS_2_2_AFE_NegStrand.R
531f187345745c5dedfed1d05c44f7f8 *R/Script_PLATE_03_COMPUTE_PSI_0_Compute.R
c0f20fc7828f43edf6f35a5856e4ecd2 *R/Script_PLATE_03_COMPUTE_PSI_1_Compute_SE.R
e5338c3161b804fde1df820d6ae86b91 *R/Script_PLATE_03_COMPUTE_PSI_2_Compute_MXE.R
11041b327205f1a662f14a685ef67e2c *R/Script_PLATE_03_COMPUTE_PSI_3_Compute_A5SS.R
c0b1dd75c8795b9581087e95f9b839f0 *R/Script_PLATE_03_COMPUTE_PSI_4_Compute_A3SS.R
310aaa2ea547c1013b5b1f7b0cdaf926 *R/Script_PLATE_03_COMPUTE_PSI_5_Compute_RI.R
ef6b8c72f79a07b715131616c583b970 *R/Script_PLATE_03_COMPUTE_PSI_6_Compute_ALE.R
98db53195431cdb210f443b79a50d6be *R/Script_PLATE_03_COMPUTE_PSI_7_Compute_AFE.R
106790aa47363fb4ad577d5b79ac6324 *R/Script_PLATE_04_PREPROCESS_2_SubsetSamples.R
fe6023fc485194ab682b1de94599b76c *R/Script_PLATE_04_PREPROCESS_3_0_CheckAlignment.R
345eb55bc027bd2d9715adb79d860762 *R/Script_PLATE_04_PREPROCESS_3_1_CheckAlignment_PSI.R
b345c064bb37c65f7028b26f8112b7f9 *R/Script_PLATE_04_PREPROCESS_3_2_CheckAlignment_Gene.R
db9dffec463f7ff3c54d586595d12ca7 *R/Script_PLATE_04_PREPROCESS_3_3_CheckAlignment_PSI_Gene.R
42dc236b6a30394465f47ea32335f20b *R/Script_PLATE_04_PREPROCESS_3_4_CheckAlignment_SJ.R
0d876234a0c33d2e5467afdd6da4c569 *R/Script_PLATE_04_PREPROCESS_4_TransformGeneValues.R
c018ca4ee91805267d170c835334a88f *R/Script_PLATE_05_EVENTS_EXPRESSED.R
bfcbffd60029aa0d1e309a34ffbe5fb3 *R/Script_PLATE_06_MODALITY_ANALYSIS_1_AssignModality.R
4337c19b0056d19e2fc6594d3e9a6640 *R/Script_PLATE_06_MODALITY_ANALYSIS_2_0_PropModality.R
07f10cb69e54b604b3b07cc7c968af87 *R/Script_PLATE_06_MODALITY_ANALYSIS_2_1_PropModality_Doughnut.R
f32d5d982706e3f88ac87b69692c7cb4 *R/Script_PLATE_06_MODALITY_ANALYSIS_2_2_PropModality_Bar.R
93ab283aab1575d8637944eeebd2b10e *R/Script_PLATE_07_PCA_0_RunPCA.R
163f8a6f355e2cec00225aa2da84921c *R/Script_PLATE_07_PCA_1_RunPCA_PSI.R
ec25a47663645112f83e9140e0f4bc6e *R/Script_PLATE_07_PCA_2_RunPCA_Gene.R
f79d588cc46b3acff84033cac6eea6de *R/Script_PLATE_08_DE_1_0_CompareValues.R
b3a47eb8f0efec07915c014df70fb00e *R/Script_PLATE_08_DE_1_2_CompareValues_PSI.R
2fdb4cff3dc252da36814aae6eae9e51 *R/Script_PLATE_08_DE_1_3_CompareValues_Gene.R
127c9b9336ee1ffd17daf393ef50943f *R/Script_PLATE_08_DE_1_4_CompareValues_SplicedGene.R
afcd2c69f1c7046404d92b90a08ee9e1 *R/Script_PLATE_08_DE_1_5_SubsetCrypticA3SS.R
203a1632919b4ce58b9c560fccc04d01 *R/Script_PLATE_08_DE_2_0_PlotDEValues.R
1d9cdc959d2cf7ca949d96a007f96195 *R/Script_PLATE_08_DE_2_1_PlotDEValues_PSI_Distance.R
83ce74f8b2d77369608f391ae4ee58c3 *R/Script_PLATE_08_DE_2_2_PlotDEValues_PSI_Mean.R
006d3df10b481755ce94c43a605c9df0 *R/Script_PLATE_08_DE_2_3_PlotDEValues_PSI_Mean_Group1vs2.R
37ddf69408f358f5acfe802606f555dd *R/Script_PLATE_08_DE_2_4_PlotDEValues_Gene_Mean_Global.R
f9a1ce9ddfdeab1e5503707574d16821 *R/Script_PLATE_08_DE_2_5_PlotDEValues_Gene_Mean_Spliced.R
8569b3e15d0723331369508220de81b3 *R/Script_PLATE_08_DE_3_PctASE.R
13ea735c2370dc79138f9675d5e562d2 *R/Script_PLATE_08_DE_4_ModalityChange.R
1717a863279d92d46b3e6d3566208c87 *R/Script_PLATE_08_DE_5_1_IsoSwitch.R
360ee3ef96e95aadd6f30f8f864cd7b7 *R/Script_PLATE_08_DE_5_2_IsoSwitch_PlotExpr.R
27889f84db638d045660d5cac5cdcce5 *R/Script_PLATE_08_DE_6_1_GO.R
af1736ed79ef85c95e29d6021619f1e1 *R/Script_PLATE_08_DE_6_2_GO_Plot.R
00ccc9d182b5d351808f01a961fa670d *R/Script_PLATE_09_PREDICT_NMD_1_ParseGTF.R
d6b83672b4009b95cf882025563200d2 *R/Script_PLATE_09_PREDICT_NMD_2_0_FindPTC.R
2711255ecc9dd3e03360b9914121d925 *R/Script_PLATE_09_PREDICT_NMD_2_1_FindPTC_SE_PosStrand.R
a530deb685e324b62f8d4659da92dd57 *R/Script_PLATE_09_PREDICT_NMD_2_2_FindPTC_SE_NegStrand.R
6d44c3a5612621476d3cc65cada2cf37 *R/Script_PLATE_09_PREDICT_NMD_3_1_FindPTC_RI_PosStrand.R
5f0faaa815931bde58fc6de35cd59277 *R/Script_PLATE_09_PREDICT_NMD_3_2_FindPTC_RI_NegStrand.R
602a6cf1d273ed36a89e359d436c17df *R/Script_PLATE_09_PREDICT_NMD_4_1_FindPTC_A5SS_PosStrand.R
cc48486986ef72892f000627c3212432 *R/Script_PLATE_09_PREDICT_NMD_4_2_FindPTC_A5SS_NegStrand.R
6ab811c6dd733fa524b7ce48fd2effaf *R/Script_PLATE_09_PREDICT_NMD_5_1_FindPTC_A3SS_PosStrand.R
80e0a41d8d8953c919c37bfa6063a61f *R/Script_PLATE_09_PREDICT_NMD_5_2_FindPTC_A3SS_NegStrand.R
e38843f2eeb0c6838380fe20caf6e2a3 *R/Script_PLATE_09_PREDICT_NMD_6_PropPTC.R
10d6a95c856d1b3dec372e8d1f38d010 *R/Script_PLATE_09_PREDICT_NMD_7_CompareExpr.R
6c34f034935c397e1eae7c5845f6bde9 *R/Script_PLATE_09_PREDICT_NMD_8_AnnoVolcanoPlot.R
23654a33bb5b1f35dbb839651b1110a7 *R/Script_PLATE_10_ADHOC_PLOT_0_PlotValues.R
9de1424908780e40e4be2219a23496db *R/Script_PLATE_10_ADHOC_PLOT_1_PlotValues_PSI.R
4df9f7fa33ebc0024c0069ef4c0bd1b6 *R/Script_PLATE_10_ADHOC_PLOT_2_PlotValues_Gene.R
2d8becd5cfdf99359b039b79f0e3a3b5 *build/vignette.rds
3b93c1629b36c47298f8a8090cd458ec *inst/doc/MARVEL.R
bae58da71b760313754f7aedaadbac40 *inst/doc/MARVEL.Rmd
3bad259324b46c7c6ff34baab75d2744 *inst/doc/MARVEL.html
9c9cbb633fcb36031478d0815254f49c *inst/extdata/data/marvel.demo.rds
1cd32bd91079beaa4ba3dfbad1a27af3 *inst/extdata/figures/DE.png
8a176743f271810e66c4e0aff57305d5 *inst/extdata/figures/Modality.png
b2800bd17da9f9ad331734ec7aded81d *inst/extdata/figures/PSI_Computation.png
56d06fa3bd872d3d753c4fb20f01b5a5 *inst/extdata/figures/PSI_Validation.png
c81231ae962e14f9cc0a695d92df9215 *man/AnnoVolcanoPlot.Rd
377818cab4472e7555ebfd8ccec35cea *man/AssignModality.Rd
57070d986122dec933dd40218679019f *man/BioPathways.Plot.Rd
3428fa952f91687b0d659b17771c8eb4 *man/BioPathways.Rd
4c36a3889d99bae73ec098d5451f416d *man/CheckAlignment.Exp.Rd
aa05eb641284301b2d58b3fb8288c977 *man/CheckAlignment.PSI.Exp.Rd
d6743f5d3dd2d53d6c96f9c755981cfc *man/CheckAlignment.PSI.Rd
ed4ba661a86657eef93d91503cd5257e *man/CheckAlignment.Rd
36e798e1cfdbfeda2bf5ae29d6c92a08 *man/CheckAlignment.SJ.Rd
59010240485f314f7986fd57f57becda *man/CompareExpr.Rd
ffcfd16d90362ad173ee6b9e9e756a37 *man/CompareValues.Exp.Rd
3b5dc669e283a763b4766a40fb79bf2d *man/CompareValues.Exp.Spliced.Rd
0d8963e263f688ac2508f2c9b6b54e39 *man/CompareValues.PSI.Rd
9f4e87c227f5fc32874c2baa7e40c42b *man/CompareValues.Rd
a1f362655dd688ffff8eb38a7535a33e *man/ComputePSI.A3SS.Rd
eac3284c30fa4a8208368121c10108ef *man/ComputePSI.A5SS.Rd
89f90136ce1f7d13262e4222efd05c4a *man/ComputePSI.AFE.Rd
6e911e768bfbe8c14220b0fee8368995 *man/ComputePSI.ALE.Rd
e44b81711a73ac8f4830a12539da949f *man/ComputePSI.MXE.Rd
441a5c90e84c076c312c3f2db803e1d5 *man/ComputePSI.RI.Rd
51e69bad8c1e81b1d2ee9c80f8e10eef *man/ComputePSI.Rd
5a639b6a03ec4f98b71cdc9c8b651ae2 *man/ComputePSI.SE.Rd
6a1085c5d8da9b21268fda573e287263 *man/CountEvents.Rd
66950176843a2dfa558b7f56be323fc6 *man/CreateMarvelObject.Rd
15b108e5d7e6df74e3c98d62bdd8ef99 *man/DetectEvents.AFE.NegStrand.Rd
97e457f888557201e9a793fefec179b4 *man/DetectEvents.AFE.PosStrand.Rd
baf54b12bcf0b38625a30de325d9bd75 *man/DetectEvents.AFE.Rd
f256f8b793448396004c3745c902f15b *man/DetectEvents.ALE.NegStrand.Rd
3a1eb4ea053aab729757ef8fbd61e9cc *man/DetectEvents.ALE.PosStrand.Rd
a3967660acda16d6c56790dea1684eaf *man/DetectEvents.ALE.Rd
efef32d6cd256b337d7469dbd594cdbc *man/DetectEvents.Rd
5a140a9500980c240fecc573c3ed8609 *man/FindPTC.A3SS.NegStrand.Rd
e86eb3034595327ca5d90109bc9c041a *man/FindPTC.A3SS.PosStrand.Rd
0e4028b2616b32323e9b70053f477bb9 *man/FindPTC.A5SS.NegStrand.Rd
0b336d5413a97464725a31dfbe8b4270 *man/FindPTC.A5SS.PosStrand.Rd
1163ff7f0f253dfcba416c7b1ffd9038 *man/FindPTC.RI.NegStrand.Rd
a48ab4bb2e87e90deb9992fe3f77cb89 *man/FindPTC.RI.PosStrand.Rd
ca866c1e5ef49e437c227b4fd3d272c8 *man/FindPTC.Rd
7af90a61d98bf723509f13d1eec11eea *man/FindPTC.SE.NegStrand.Rd
0d2b759ab90a13575c60ee4380a31f7f *man/FindPTC.SE.PosStrand.Rd
dab7caa7ebdea871d97f8674b053a633 *man/IsoSwitch.PlotExpr.Rd
8422d4d9add335789f2598fa7ec633c9 *man/IsoSwitch.Rd
de0a56b738da26ccf405c7b7b08af120 *man/ModalityChange.Rd
7c11a61b29b2ac2d636a448df95c14e0 *man/ParseGTF.Rd
1972020110b1263cadf173ebca69fbe1 *man/PctASE.Rd
e8762cce9f11c26829631b0cfafc76db *man/PlotDEValues.Exp.Global.Rd
a4e7dc64597b85236a5d7f74810feb36 *man/PlotDEValues.Exp.Spliced.Rd
c2d6da433e4abd5666ce79a2a44bbf8c *man/PlotDEValues.PSI.Distance.Rd
be48cc57036dccd49894d19419b0cf77 *man/PlotDEValues.PSI.Mean.Rd
14e476980c6356b1874ee558963ad504 *man/PlotDEValues.PSI.Mean.g2vsg1.Rd
bc554f6ba69408fb5470acc45738233a *man/PlotDEValues.Rd
c0ed8e799534ec4b79b380a8534b426f *man/PlotValues.Exp.Rd
85cab03f4f230f4f9b259f68169edb71 *man/PlotValues.PSI.Rd
e661adaf44bf17d8a65fa5d9e097c157 *man/PlotValues.Rd
2b45bcd321c9fff8bc20426c1fa6908e *man/PropModality.Bar.Rd
40a7a01f0d74bea2a508c70046ffc014 *man/PropModality.Doughnut.Rd
8b84125397466766ec658f4d7f4aa9fe *man/PropModality.Rd
f475e915b2f19f4f09fc4af96a4f56f8 *man/PropPTC.Rd
e153ac0d3c8cda6ad45d6a1789d183d3 *man/RunPCA.Exp.Rd
524dcfd482c8ef88ca65920598374d64 *man/RunPCA.PSI.Rd
53c3bdf187c9c9446d310ae354d51446 *man/RunPCA.Rd
69362f469b16f71622d5321d2bf2ee5a *man/SubsetCrypticA3SS.Rd
a827075ecbe5f53279c40b81315e0306 *man/SubsetSamples.Rd
fe9570f9165b124ff47fe5c6d3fe4091 *man/TransformExpValues.Rd
bae58da71b760313754f7aedaadbac40 *vignettes/MARVEL.Rmd
