e7bc669d8f76faec8afc7dde46c21316 *DESCRIPTION
8749758759e853958afb5c1a33f93082 *NAMESPACE
15c6ab379964fd3aa0bbc0beb21fba60 *R/AbForests_AntibodyForest.R
c79d87106d93a2ebac69fb21b8965a97 *R/AbForests_CompareForests.R
a85cd7b273bee43758f7e8006c75d2df *R/AbForests_ConvertStructure.R
ee024b12d83e80b029cad15ff44b59b0 *R/AbForests_CsvToDf.R
34a82c97ed987f57078604f450cfd0b9 *R/AbForests_ForestMetrics.R
757682c199083520eb8cf769c43e1758 *R/AbForests_PlotGraphs.R
453d1a549313f4beeee158b8ca38b7db *R/AbForests_PlyloToMatrix.R
dc60e70696d9a44bfd4370f8765ebea0 *R/AbForests_RemoveNets.R
4efb2946ec5c5e08ce123afd3dc294a0 *R/AbForests_SubRepertoiresByCells.R
b76fdd13e2a8dbf5bf89b923801caa5e *R/AbForests_SubRepertoiresByUniqueSeq.R
6a1d7c36dd2250c7807a5333729ef389 *R/AbForests_UniqueAntibodyVariants.R
e356c5051e51a831013a6cb161fa32e1 *R/AbForests_data.R
d55bac72af7955de5977b62a6596573b *R/AbForests_internal.R
082e5408f371e218b304773dd41b8d6b *R/Echidna_Internal_functions.R
625c305ab85c3c94fdef139ba943baff *R/Echidna_data.R
355bd6962f253749a1d3c58bb347bbeb *R/Echidna_other_functions.R
3fed16ad4386c3ec81d9e530c94dd607 *R/Echidna_simulate_repertoire.R
dd6e07c851e19084ed8c0649f404c224 *R/Echidna_vae_generate.R
772d6d44d5976e40f174abff6b1ca902 *R/Echidna_vae_internal_functions.R
7065a9f2ab1e356d7018caefa6bf3731 *R/GEX_DEgenes.R
23129ec7fcf1c3d5a71d1bf78e71a521 *R/GEX_DEgenes_persample.R
2ec3a9053c91164fee8f217d4f59a718 *R/GEX_GOterm.R
5e140807848438c42559c0aad23ee9fc *R/GEX_GSEA.R
2ffb1a7c3e343780770b6fa7a3d06e5e *R/GEX_automate.R
0fb741abefdad4bb27ae780884466f2e *R/GEX_clonotype.R
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260c572c7cb48f9d7044e8c15f151d73 *R/GEX_cluster_genes_heatmap.R
b37442181e93941ca0e836cbd1a28ce2 *R/GEX_cluster_membership.R
b803804e76eb2aa97e48c474e5b54df8 *R/GEX_coexpression_coefficient.R
596c03a6d34cda4b196e7f304a1fd510 *R/GEX_dottile_plot.R
d2ec769204758f5bc13091fe759267b4 *R/GEX_heatmap.R
8bc325f5f89afa93abc365db753b64f9 *R/GEX_pairwise_degs.R
0e214d92d799369154f6281667e42967 *R/GEX_phenotype.R
b2a75b14ff1e645b5954dfe7a58cf4a8 *R/GEX_phenotype_per_clone.R
dc3d3237bdd3db58f706441841420edf *R/GEX_proportions_barplot.R
0bebfb56edac3b5015d3faaa5397db96 *R/GEX_scatter_coexpression.R
15c4af65ec13b9da88a4ec539309172f *R/GEX_topN_DE_genes_per_cluster.R
4a2ed8bf9bb2224e6aabb4a39d72688e *R/GEX_visualize_clones.R
ba201b16807ff98ab317bcff6b836be4 *R/GEX_volcano.R
a8eb170720bece85582e1a97705ceb84 *R/PlatypusDB_AIRR_to_VGM.R
08b615cfb39aaa0af7a05aaa784e1965 *R/PlatypusDB_VGM_to_AIRR.R
d92e122161c80cb68865f2cd761f0e0e *R/PlatypusDB_fetch.R
d2a00a26900214045bc531bae639e6e7 *R/PlatypusDB_find_CDR3s.R
8ff905905cdc065387dba6220d240a4e *R/PlatypusDB_list_projects.R
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df85b172369e408fd76ef4b2d9a8174c *R/Platypus_data.R
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3909fe19f14c5bd0e315f342b14f052b *R/VDJ_GEX_clonotype_clusters_circos.R
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6236b28c15871dbd53c410fd75323452 *R/VDJ_GEX_matrix.R
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3f7a53d3cd9e20c8577a46020b795573 *R/VDJ_Vgene_usage.R
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7e7e70610d3ee03ab1fe2a5fc194bf5d *R/VDJ_Vgene_usage_stacked_barplot.R
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9ea2e937db47a9f0b62d7af25b28b581 *R/VDJ_alpha_beta_Vgene_circos.R
7faa6870ceb80d310b65752bc88685a5 *R/VDJ_analyze.R
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581ac03e2faa532de9da5a5e0b980dd7 *R/VDJ_call_MIXCR.R
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9cd39f3bd520d62e02e71aa751c627b1 *R/VDJ_clonotype_v3.R
57cbd97ba4c0af44a06941c29f9a0728 *R/VDJ_contigs_to_vgm.R
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6ce8139b23e61d9cfb2b6f73de0cbf51 *R/VDJ_db_load.R
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88733284499a1bcda14bc478e7dd5bda *R/VDJ_dublets.R
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7246be21b50506cd17a19d3fd5962fd5 *R/VDJ_isotypes_per_clone.R
107ebc931dd32c3d77c850c3f910b732 *R/VDJ_logoplot_vector.R
2b7ad9819d43f3e71b7f80ea24c7d259 *R/VDJ_network.R
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013733ba8b69598bceec40560c07d5b1 *R/VDJ_per_clone.R
59c0370718fb9956f7918539278b4f3d *R/VDJ_phylogenetic_trees.R
4e3a0b52dce0fccbfe5264a22a7d5beb *R/VDJ_phylogenetic_trees_plot.R
594b89430f280d93aabe0230fd02fc26 *R/VDJ_plot_SHM.R
3ff5c9aad551b54dd42b4d62b676bd58 *R/VDJ_reclonotype_list_arrange.R
6390bb4297cbf497bbc9a7d3062acf61 *R/VDJ_tree.R
8d785e00222ab831e061ed5489c4521c *R/VDJ_variants_per_clone.R
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404575536bed91ce3dd0282412bf7c61 *R/automate_GEX.R
1dd1b0d23fad07d66504068d4839e1e0 *R/call_MIXCR.R
4586033191b8373f598466fb71ee4831 *README.md
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9b98287ad1b05199238f45303b5ef3aa *man/AbForests_ConvertStructure.Rd
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6b65dbbcb5be17d082fc41af5e7bf313 *man/AbForests_ForestMetrics.Rd
8432a68e16e1900f7507257a05019fc6 *man/AbForests_PlotGraphs.Rd
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4a0893ddf8277fdbf8b3ae98b35666ff *man/Bcell_tree_2.Rd
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8cb6235a54e9abc145cf48776a6fb80b *man/GEX_DEgenes.Rd
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9a7d01a8d87a7c7dd1d3eb67855f5107 *man/GEX_proportions_barplot.Rd
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db8cf8eaebe58621b46b92847a0e2f1a *man/GEX_topN_DE_genes_per_cluster.Rd
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51b294980921b31a062507257b5bbae4 *man/GEX_volcano.Rd
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4d24016c235b3fc3f1d6f38048507916 *man/PlatypusDB_fetch.Rd
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7acfdd1c0c837c9215bb0ccaf0804157 *man/mus_b_l.Rd
0f7eb4102d4dbdef6f1f7b8c03aa9bb8 *man/mus_b_trans.Rd
5f37d45599a76d1020c8727f7bff5e85 *man/mus_t_h.Rd
61a2869b4c27521c096b3bc676306710 *man/mus_t_l.Rd
ac0817779a4a1c136582eda4c338a3de *man/no.empty.node.Rd
81bb3a361469b19ff7622327490e0d75 *man/one_spot_df.Rd
79e3cf8a0185a6e02b85503165740fcc *man/pheno_SHM_prob.Rd
cb863614750956e342650fd0b78999d4 *man/select.top.clone.Rd
455ccdb6a5fdee83224efbcb91ccfe55 *man/small_vgm.Rd
c04745b414352d67cb5060df9cd7dcab *man/special_v.Rd
7656915b18bd2f7c73a982d12d9d5972 *man/trans_switch_prob_b.Rd
b2b8b86d7b0cdec8ae0299193674365a *man/trans_switch_prob_t.Rd
50a273b5474d1aa49816910a4638acf1 *man/umap.top.highlight.Rd
66f2907cb56369ce5790bc2b61292446 *man/vdj_length_prob.Rd
eacce10254c07155911fef9ea1903e21 *vignettes/PlatypusV3_agedCNS.Rmd
