Package: Rogue
Title: Identify Rogue Taxa in Sets of Phylogenetic Trees
Version: 1.0.0
Authors@R: c(person("Martin R.", 'Smith',
                    email = "martin.smith@durham.ac.uk", 
                    role = c("aut", "cre", "cph"), 
                    comment = c(ORCID = "0000-0001-5660-1727")),
               person(given = "Andre J.", family="Aberer", role = c("aut", "cph"),
                    email = "andre.aberer@googlemail.com")
            )
License: GPL (>= 3)
Description: Interface to 'RogueNaRok' (Aberer et al. 2013) 
  <doi:10.1093/sysbio/sys078>.
  Rogue taxa are a class of taxa with uncertain position in a
  phylogenetic tree. For inference methods that yield a tree set (bootstrapping,
  Bayesian tree searches), rogue taxa can assume different positions for each
  tree. The presence of rogue taxa in a tree set can potentially remove all
  information from a consensus tree. The sum of branch support 
  values in a consensus tree can often be increased by removing rogue taxa.
URL: https://github.com/ms609/Roguer/,
        https://github.com/aberer/RogueNaRok/,
        https://github.com/ms609/RogueNaRok/
BugReports: https://github.com/ms609/Roguer/issues/
Depends: R (>= 3.5.0)
Imports: ape (>= 5.0),
Suggests: testthat, TreeTools (>= 1.4.5)
Config/Needs/github-actions: callr, pkgbuild, rcmdcheck
Config/Needs/coverage: covr
Config/Needs/memcheck: devtools
Config/Needs/metadata: codemetar
SystemRequirements: C99
ByteCompile: true
Encoding: UTF-8
Language: en-GB
RoxygenNote: 7.1.1
NeedsCompilation: yes
Packaged: 2021-06-30 10:15:36 UTC; ms609
Author: Martin R. Smith [aut, cre, cph]
    (<https://orcid.org/0000-0001-5660-1727>),
  Andre J. Aberer [aut, cph]
Maintainer: Martin R. Smith <martin.smith@durham.ac.uk>
Repository: CRAN
Date/Publication: 2021-07-01 07:30:13 UTC
