3fbe9ccb69d66a3fba95d4c4e68a4e9e *DESCRIPTION
b87acbc1d9a17bfb5a8289a47d537691 *NAMESPACE
ca75c324ce5b19ce8c224285d569685a *NEWS.md
92274cad70436c7deff93b549badc97a *R/Ancillary_Indicators.R
91f55456caacfe089c604c797516e0da *R/HCRs.R
c953f4eef25d9c7c1af4c454a36842b8 *R/Misc_fun.R
eb6f3985f7a85308fd6d28a4da53f2ee *R/RCM2MOM.R
bb3612883887e1491370492b495cf197 *R/RCM_assess.R
2c557a276a0555c8e66a0db65c46a326 *R/RCM_data.R
07c020358252a3c74a06e78c021587fb *R/RCM_est.R
00a37807740b5f3804ab34b7966affc7 *R/RCM_int.R
1975c301a09e44e219b27167235d8e5e *R/RCM_rmd.R
e880e573fa3d7e0ae32913641afba7a0 *R/SAMtool-package.R
962e6293a47a91ce58122b2f2f916a3b *R/assess_DD.R
16fbfca720c36a26e6d09c675f254450 *R/assess_SCA.R
b53e2479e15b54b32d65b71fcef15e6f *R/assess_SCA_CAL.R
39d6a15c6c10a856add6772311ddf185 *R/assess_SCA_DDM.R
656ef52015fd4afa4cd980389057765e *R/assess_SCA_RWM.R
89dd6d2d536cfce8b0faaa0cb993b781 *R/assess_SP.R
8fae18a9ef786efe73aa3fc1e2980d27 *R/assess_SSS.R
4a25a75d6f45c6395d5300d8e0046c7a *R/assess_VPA.R
0d46cb9bfb8f8ea7d9830625e2a7b731 *R/assess_cDD.R
754729d2e5e108645a6b013ccae2cd20 *R/assess_shortcut.R
5530d1ee445e8806a8dfab3ace6edff2 *R/define_S4_class_RCModel.R
c41c88bb7c883af6c4957131d22d2345 *R/define_S4_class_assess_RCMdata.R
a77bd32005023bae50fce07a7eb4983d *R/define_S4_class_profile.R
4d0f7e0dd6b5ae83b65830892ad716c5 *R/define_S4_class_project.R
d468a48ecad1374f26a02b68c06bfafe *R/define_S4_class_retro.R
f804d22781ad6af8ab55243ae401e63e *R/define_S4_generic_RCM.R
2615ed505d600e7476fc6195d51c424c *R/define_S4_generic_posterior.R
6790782bab8be96ff5b43efebec8571f *R/diagnostic.R
84748820ac8a5c2323222a97fa32155e *R/document_data.R
7aeaa863c381b30ddcaacc2a7510e2e3 *R/interim_MP.R
6194fb98ac1cca4d361eb7816da39bad *R/report_DD_TMB.R
7f300903080d40d482fc4ed70f01dd4d *R/report_SCA.R
d162df637f1f1e77f3a37b867055ac4d *R/report_SP.R
68b1ee1840c4040c6a2838630a7203b3 *R/report_SSS.R
6144c8b725fff6c3e9b5c7c0f07f7a1f *R/report_VPA.R
386d0090b55710f707729a2a091fc54f *R/report_auxiliary.R
676a78457aa98bbf1a8734fc5d223335 *R/report_cDD.R
c90f31c5dc364166eb496c967fab9eef *R/report_spict.R
60eff7439a618fab0b438487f55024e6 *R/retrospective_AM.R
d7cc23789df377b754f2f03171f533e9 *R/rmd_report.R
d296fc31a698cc7801e900dbb284eca4 *R/z_MPs.R
4962d1a19cba08d36d8e315343f1e4de *R/zzz.R
6cf019417ff5cd6e5fb7a45a474abdee *README.md
9ecb0bdfb906213cc54af05f9a8fb645 *build/partial.rdb
eb7c1691b6e8c9e1a6c270ec565a956d *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
98f4823b0ca44ff9a9ccc2f5f1ee0b05 *inst/include/DD.hpp
48cc77364f6a9c9a9930a8e900cda71e *inst/include/RCM.hpp
25599d119964611802a2e8dbd00f7ed0 *inst/include/SCA.hpp
441c38e7b3793f2aca467ffd7949de50 *inst/include/SP.hpp
05180817df5e836e4fb07608b829b741 *inst/include/VPA.hpp
d61e244fd8446cfb5b5724198ecee0da *inst/include/cDD.hpp
c39647e635eb9f974c26681194e16d3c *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
c78007b6b560d4e67735aae1b8b867bf *inst/include/ns/ns_RCM.hpp
0a46cb9d039506511554768779ae4e02 *inst/include/ns/ns_SCA.hpp
c712874fb94e45cec0864453a7e11be9 *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
8e3f5c336e12afb86ca43e1e54b6591c *man/Assessment-class.Rd
536f025b4e71997c52de5c0a8c14dd5d *man/DD_TMB.Rd
5d82ba050eec68367c433ef47c3c5df9 *man/HCR_FB.Rd
6be55d26f2a5a549e07305a4bebc05ee *man/HCR_MSY.Rd
ac6423d487d4b6caaced76dec1a5d718 *man/HCR_escapement.Rd
2f9c18e80a7d7d43a20f731f9fca44af *man/HCR_fixedF.Rd
ead53278ad9c9985175dd1a00a04e897 *man/HCR_ramp.Rd
6c4da6d53b0aac34060caaf729b7b2dc *man/HCR_segment.Rd
deb4bfa7f63131574a169915c67beecf *man/HCRlin.Rd
ab9076d6c1cb30e29da33f4b13796157 *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
2ff10c056dc956d9757cf4584b334bb0 *man/Probs.Rd
70e09ecd8e875003c9ba7f95ce372df1 *man/RCM.Rd
c22b2c2534e416c09128da8bddd0d328 *man/RCM2MOM.Rd
f8ce5efb483864182b60949219bed22c *man/RCM_assess.Rd
26be8626385a13560e6df57bd42ae331 *man/RCMdata-class.Rd
61fe79a09bade9d76ba208477909ace8 *man/RCModel-class.Rd
004a46366426e1e0b82859b518fef249 *man/SAMtool-package.Rd
6e2a36e11e546d1e4b8715a0261fcb5e *man/SCA.Rd
d0ca2eaf8a508a6b4bf27aa26504e2f4 *man/SCA_CAL.Rd
41beaaef0320e6ac79e20bd3f7d2e76a *man/SCA_DDM.Rd
066772b872b43735b33e793af75d1209 *man/SCA_RWM.Rd
ba3bb1eddc12d7661b9cb8d2f0836630 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
098f3e14ff31d9e0d733c91d487d7fb9 *man/SSS.Rd
59966358fef98f1eac963f3750616761 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
2606215e87128f693f1dd9e8b2693db9 *man/VPA.Rd
1bd5467861ed445d3d9268f0b7a3ab5c *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
31da4c6ef0812b98426724c28a2fa131 *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
06ee23d8d6361d092119e04354582eca *man/make_MP.Rd
576911732ce0326f36d71dca665e6bdc *man/pcod.Rd
b8966cba16a4ae2324b6871df9b4f9f2 *man/plot.Assessment.Rd
8354fb1143aa13f9e940adbc77fb9976 *man/plot.RCModel.Rd
4684b365a5407f166342634486652e02 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
b5530965d77001625145eb5889de36fc *man/plot_betavar.Rd
a71572feab1bab60f650437dee046603 *man/plot_composition.Rd
4bc1401c7046e7f1a3769826e76916b8 *man/plot_crosscorr.Rd
352fee8cf40f0207214c2e5037c7c967 *man/plot_lognormalvar.Rd
5437df95df9b46d10a5f461aeca89f36 *man/plot_residuals.Rd
06c1da01d4c059373ecff529f3b71657 *man/plot_steepness.Rd
7c351be5a6c862b2ce42e6dc3c9a0175 *man/plot_timeseries.Rd
367fba5b437c1a8b1ce774e622da9d5f *man/posterior.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
9b9e6b388ad61199bd4b3e5fda57965a *man/prof-class.Rd
72819ae7ab1ede9b026d3f820b7a99e4 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
59a4a72fa94ec7334ca8636891d7c901 *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
fd3443508395579f971081da05d10044 *man/retrospective.Rd
20fab379b51d076d535807b32da8b1df *man/retrospective_AM.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
fc7af38ab1bf8aa48a9cdb8b65533609 *man/swordfish.Rd
5e2f2a37373cedc75d0d73c995fc484f *man/userguide.Rd
d4ef7a133844e79cd6731af11bc0051c *src/Makevars
6aa95f33f2477fc38dc0bc28dda50e32 *src/SAMtool.cpp
