Package: Signac
Title: Analysis of Single-Cell Chromatin Data
Version: 0.2.4
Date: 2020-03-04
Authors@R: c(
  person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-3044-0897')),
  person(given = 'Paul', family = 'Hoffman', email = 'phoffman@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9448-8833'))
  )
Description: A framework for the analysis and exploration of single-cell chromatin data.
    The 'Signac' package contains functions for quantifying single-cell chromatin data,
    computing per-cell quality control metrics, dimension reduction
    and normalization, visualization, and DNA sequence motif analysis.
    Reference: Stuart and Butler et al. (2019) <doi:10.1016/j.cell.2019.05.031>.
Depends: R (>= 3.4.0), methods
biocViews:
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.0.2
URL: https://github.com/timoast/signac, https://satijalab.org/signac
BugReports: https://github.com/timoast/signac/issues
Imports: BiocGenerics, GenomeInfoDb, GenomicFeatures, GenomicRanges,
        IRanges, Matrix, Rsamtools, S4Vectors, Seurat, data.table,
        dplyr, future, future.apply, ggplot2, ggseqlogo, irlba,
        pbapply, tidyr, zoo, patchwork, Biostrings, BSgenome, gggenes,
        grid, stats, utils
Collate: 'data.R' 'generics.R' 'dimension_reduction.R' 'motifs.R'
        'objects.R' 'preprocessing.R' 'utilities.R' 'visualization.R'
Suggests: testthat (>= 2.1.0), chromVAR, SummarizedExperiment,
        TFBSTools, motifmatchr, BSgenome.Hsapiens.UCSC.hg19,
        EnsDb.Hsapiens.v75, JASPAR2018
NeedsCompilation: no
Packaged: 2020-03-04 19:15:26 UTC; stuartt
Author: Tim Stuart [aut, cre] (<https://orcid.org/0000-0002-3044-0897>),
  Paul Hoffman [ctb] (<https://orcid.org/0000-0002-7693-8957>),
  Rahul Satija [ctb] (<https://orcid.org/0000-0001-9448-8833>)
Maintainer: Tim Stuart <tstuart@nygenome.org>
Repository: CRAN
Date/Publication: 2020-03-13 08:50:02 UTC
