a9a3182c2fd678e3cb0be667908016ac *DESCRIPTION
bb8e15e887027e2f840c29065284da4c *NAMESPACE
7a9b7ac577781afe2d45ad40a1dea918 *R/ancRECON.R
ccada179a566120a0448142b00e9b179 *R/convertPhangorn.R
3393e8afaace69415ea1ea2725ac97ad *R/corDISC.R
2056d3b1da8d1aa2054d92e8ee91c549 *R/corHMM.R
2e6fa84a890f86a78269eabafbe02570 *R/makeSimmap.R
e243df23b73c4ccd67844e48f0b95c7a *R/plotMKmodel.R
3c723f095c37261722ec9b44cc9c5940 *R/plotRECON.R
4158b4f9a453a55df714f25d8e3aa787 *R/rate.mat.maker.R
4972ba413ce71863c67c015508d1a37a *R/rayDISC.R
ad8af9a093de1b9f325edcb69ffe2f1f *R/testCode.R
9bc993fc5adc29f6e2766b77f4e0a4c7 *build/vignette.rds
b6961c6dd5095d1e485646c07ae8d48f *data/primates.paint.rda
100b928bab150149b4cb4d4d46dcbb08 *data/primates.rda
4a9b42f6e7d78c9949386dcdff63d79f *data/rayDISC.example.rda
b79d17b4515254569956fbd60e56fcf1 *inst/doc/corHMMv2.1-vignette.R
fe80cd05c77f539027ac9786a9dc4865 *inst/doc/corHMMv2.1-vignette.Rmd
b2614076f04235f8b55c05f91b2319fd *inst/doc/corHMMv2.1-vignette.pdf
1b0c4bc750620e2eefaf7e258c014133 *man/ConvertPhangornReconstructions.Rd
8479bd0f7a7760fe403f4dd029965646 *man/ancRECON.Rd
705bdca4f9b48ba8ee6e1cf2097217da *man/corDISC.Rd
bf92d7fd60e10bdd116bbb757761c3fc *man/corHMM.Rd
d33803a77734da2957e09db35e804ba7 *man/getFullMat.Rd
37cdb086c639f740dffadecb84861638 *man/getRateMat4Dat.Rd
bd797a55a2f4633e06cf27171a8274ca *man/makeSimmap.Rd
feebf2b0cc2f325f86f6f311d533dea4 *man/plotMKmodel.Rd
ea6de2c957903e9a570d4cbc03719aca *man/plotRECON.Rd
e5f4e5e602dd8118bec3c20a91842218 *man/primates.Rd
046b79e19ebb2c9b988f3ee9f287b4ea *man/rayDISC.Rd
59c60786146a44865dd0f49dff4a7221 *tests/testthat.R
b1cff229bcbbab46503fd6589788111f *tests/testthat/res_old.corhmm.Rsave
35c2c5e7576504328991983a27b7f45f *tests/testthat/testlikelihood.R
9622200c0f754e9fa40b324d8d9b84db *vignettes/corHMMResults.Rsave
fe80cd05c77f539027ac9786a9dc4865 *vignettes/corHMMv2.1-vignette.Rmd
64861efddef204ecd236ffa1276e4435 *vignettes/corHMMv2.1-vignette.html
647c867d23675cd059e7f280ff117a86 *vignettes/randomBD.tree
260828b26bd8de2ded08da86edc3109d *vignettes/simulatedData.Rsave
