561c4496fc37a6efc78519fbe1a9137c *DESCRIPTION
81f09a061b48aaa1c6736d4b04c6ac85 *LICENSE
33b9780f47f061471dbff3574218fdc9 *NAMESPACE
8197fd1ea13ea53b010aa4f3cff30188 *NEWS.md
13dc9ff13adec48bae53018c666f11a4 *R/ModelDiffNet.R
94325d2b6afcf5ee33fd489863ef8b19 *R/ModelSEIR.R
fb11079df50817ce681198cd94767c01 *R/ModelSEIRCONN.R
236750c88f3f626c07322ba164049bd5 *R/ModelSEIRD.R
6c0f0c7dd6b4378e7ad539ce720fd1aa *R/ModelSEIRDCONN.R
e8f1625eadf197340ea3c25f27945300 *R/ModelSIR.R
8fe2bcf21e4187198f9e89caed20ab02 *R/ModelSIRCONN.R
1f527eaf3d102ac430bc8da1cbb1714e *R/ModelSIRD.R
b37ada05eac280f163c76523aeaedc5e *R/ModelSIRDCONN.R
87859643f79fd1aad255c6ebc626fea0 *R/ModelSIRLogit.R
6e1c40a2dbd32ca6b42fe77e16149977 *R/ModelSIS.R
4780880b871322fb1df1bd9fcddb0e45 *R/ModelSISD.R
98a95cdf979dfe064d017d0ffb259d83 *R/ModelSURV.R
0be5654540f7ed44f5abde88df2d6981 *R/agents-methods.R
650f5d0120a2661cb4135607c39ef3d5 *R/agents.R
e4a7aa736212a031418ff2b958afed0a *R/cpp11.R
0f0021219b24cf07a50c64db05d2d6e3 *R/data.R
403cc799414455f516813d092f195c08 *R/epiworldR-package.R
79d8ba8ee4e8d9dbd4a5c3f394cc1440 *R/epiworldR-package.R.in
f2feaae9d7e785ca59556d3f7e228151 *R/functions-renamed.R
7c531d87077f941867e2afd32166cb3f *R/global-actions.R
d3d110de5b53350314b766214fde47b5 *R/make_saver.R
a907a97d9bc088f528c77ca41239461b *R/model-methods.R
8576744e45f07d1d2e2532655a563681 *R/plot_epi.R
cc9da24ed73146bd5390a3c93b46863a *R/tool.R
5f900a5bba87fe1f8176f6af885c213e *R/virus.R
af07f3b043f6f9994958b26a340c430a *README.md
eb8dae08ce5124b4bab48b7331ec7158 *build/vignette.rds
c3cded853a2388ad53569a7105d1c1e3 *cleanup
547aeda9a6696d45aa455dac75712828 *configure
ff3f402a033dd8db7fa88c8bb321e701 *configure.ac
a57b80f03a22e94797ba3164e40da04f *inst/CITATION
a70410c24c27c83178cfa03331685d3e *inst/doc/getting-started.R
d716d895c96355906c46e78c516ca3f6 *inst/doc/getting-started.Rmd
1259c77bf54e48d1bf3c4c8add7d8d07 *inst/doc/getting-started.html
669c7e2ac32453a3731eee6a1c7e9600 *inst/doc/implementation.Rmd
13fbe4327e92a832842fda891721c865 *inst/doc/implementation.html
b48606a248d6d2ab20a945d1105ee5e2 *inst/doc/run-multiple.R
295e01aba3c5a34032de3b3a9334a5cd *inst/doc/run-multiple.Rmd
ec290f83e5e41a1613768609773bf62f *inst/doc/run-multiple.html
021e66e0a21d6a6e68e76154118eee23 *inst/include/epiworld/adjlist-bones.hpp
9f9eb7e90de871ad860afe306db9ae38 *inst/include/epiworld/adjlist-meat.hpp
1780df3fbe7eb56044b4fb26e619dfe9 *inst/include/epiworld/agent-actions-meat.hpp
6e5f0ac7a648c0def78e435a332833e1 *inst/include/epiworld/agent-bones.hpp
6fbf2969a376dec03e5369fe1d24659b *inst/include/epiworld/agent-events-meat.hpp
af15ce9cddefb3ddb8d93164c044b51a *inst/include/epiworld/agent-meat-state.hpp
3c238633cb61e2b64f260584d30c915b *inst/include/epiworld/agent-meat-virus-sampling.hpp
1fa10f3c4718056c9831549f05632737 *inst/include/epiworld/agent-meat.hpp
4636d237490a1d252034c9682f57015d *inst/include/epiworld/agentssample-bones.hpp
2286567ac5cd71566f2312ab514968bd *inst/include/epiworld/config.hpp
ec33ac7f493f3b5f86676951ba243f45 *inst/include/epiworld/database-bones.hpp
898b65ed6325a337b4ac25ed51c6182d *inst/include/epiworld/database-meat.hpp
f8f46142fe4c6d2b2049449ba63db301 *inst/include/epiworld/entities-bones.hpp
8f044b5a321d3dbbbe1d2175649a39b1 *inst/include/epiworld/entity-bones.hpp
aa3c1a201cf95177a2a39d1e2ab210a2 *inst/include/epiworld/entity-meat.hpp
4c387da6cfe9674e607b05dd3e46ab55 *inst/include/epiworld/epiworld-macros.hpp
cffa7ca6422d82c16f086527a6acc1af *inst/include/epiworld/epiworld.hpp
57a7c6d00757711fa3e0ad4470f8f5e4 *inst/include/epiworld/globalactions-bones.hpp
a47025f622881a5200456359e32fdd33 *inst/include/epiworld/globalactions-meat.hpp
3490fe919ac35ec79e0c7b449cec5efb *inst/include/epiworld/globalevent-bones.hpp
433c67a2facc2fd9e2bbb6d3442c848e *inst/include/epiworld/globalevent-meat.hpp
7982ad518beeb98b59ef5a25417bacf8 *inst/include/epiworld/math/lfmcmc.hpp
4eff0e22a75a85f99ed41aef5ac3ea99 *inst/include/epiworld/math/lfmcmc/lfmcmc-bones.hpp
e24ef31af1c4594c3a4d569d9408db07 *inst/include/epiworld/math/lfmcmc/lfmcmc-meat-print.hpp
c135f614b48c5cd469043a9d883324b9 *inst/include/epiworld/math/lfmcmc/lfmcmc-meat.hpp
2aa4442bccba94a5fb0c88e328f3788c *inst/include/epiworld/misc.hpp
3f2249c99e71d94d43b305ccf31611b7 *inst/include/epiworld/model-bones.hpp
cbbf8cb0006b96992032edbdbc41e3c3 *inst/include/epiworld/model-meat-print.hpp
8c49c11156c5ea3d5dc85601eb655408 *inst/include/epiworld/model-meat.hpp
3f56406e10c3461af5c57e4faeae045e *inst/include/epiworld/models/README.md
c96f1ca2314f75d64fb5db02e1d99596 *inst/include/epiworld/models/diffnet.hpp
2de6c8155da43cf47243f930b8089b8d *inst/include/epiworld/models/globalactions.hpp
0ee9b62d0aa41b9a49aa32b1c16bed57 *inst/include/epiworld/models/globalevents.hpp
c637a8cb821c66b618f3fa367505f35c *inst/include/epiworld/models/init-functions.hpp
1ca9d84eb14ed216588309c1bf519769 *inst/include/epiworld/models/models.hpp
ca6ef64c2eb8407bbd75828726b3937f *inst/include/epiworld/models/seir.hpp
4ed712c090999c96443883034d147abf *inst/include/epiworld/models/seirconnected.hpp
3b8fe8705469adcdf5a82c0d535adcbf *inst/include/epiworld/models/seirconnected_logit.hpp
521da4f029229c82a8f0383e6a2d1af4 *inst/include/epiworld/models/seird.hpp
6a5ed39368d51e0efead356137f50e26 *inst/include/epiworld/models/seirdconnected.hpp
a7e712c801d6b80699f51cf3269c527f *inst/include/epiworld/models/sir.hpp
5838704c709b7b5030d872a8b820ba7f *inst/include/epiworld/models/sirconnected.hpp
c3f9252d9a007a094be26caad70d378e *inst/include/epiworld/models/sird.hpp
baf829245bd3478e6863fc79df007a07 *inst/include/epiworld/models/sirdconnected.hpp
3a0f45f587b788124e8f9021781e739f *inst/include/epiworld/models/sirlogit.hpp
856a1873cd4a0e936de490478a43fdc5 *inst/include/epiworld/models/sis.hpp
c3a56fae3c3ee83848cb5b9c62e15c0f *inst/include/epiworld/models/sisd.hpp
8708af276cd572c9dcd7001275c05a4a *inst/include/epiworld/models/surveillance.hpp
c33343d870e393248e50a0629c957fd3 *inst/include/epiworld/network-bones.hpp
a5fb1fefc48c4866aad40ff9e607aec9 *inst/include/epiworld/progress.hpp
5eae0fefdcd5cfa405080f6718d79ab5 *inst/include/epiworld/queue-bones.hpp
0d11552f3a3d1cdb1f559b6904de8f4c *inst/include/epiworld/randgraph.hpp
d04b3dd6dceac6df8eea112b0d0529fe *inst/include/epiworld/random_graph.hpp
00214ba1f238f3b885ce673b6ee3b83a *inst/include/epiworld/seq_processing.hpp
c0da9d9ee49f22961c56314d167d0590 *inst/include/epiworld/templates/viruses.hpp
dfd41b2a55b9dfca0c65356c0bc494e4 *inst/include/epiworld/tool-bones.hpp
727e3022774ef57264d8e36a6c723538 *inst/include/epiworld/tool-meat.hpp
e05046851ceb09118f5f77753e7a784b *inst/include/epiworld/tools-bones.hpp
05b94e47394e35d4667d432a31bf8833 *inst/include/epiworld/userdata-bones.hpp
60ab5c7fbbe0306274b74bf7decf1054 *inst/include/epiworld/userdata-meat.hpp
a3b1e0fd1b30fdff39b6dc6a90be1fca *inst/include/epiworld/virus-bones.hpp
0db23652797574479523012ef3111f28 *inst/include/epiworld/virus-meat.hpp
45c752ac08f54a7f790cb08e39b96b82 *inst/include/epiworld/viruses-bones.hpp
2b59c1ceb887e598498baec05a3e263b *inst/tinytest/test-get.R
6b325439341b3783bbc7f69da9a379d2 *inst/tinytest/test-multiple.R
03d44136de0416623a68ffbbe1c3bbcf *inst/tinytest/test-sir.R
aa4c6b33ba3733e7f80cbbcd3c098c74 *man/ModelDiffNet.Rd
0c7216684fadebc1761ea4703263c726 *man/ModelSEIR.Rd
96e78d82e7fd69cb5e9e0821d4fa90a3 *man/ModelSEIRCONN.Rd
0778b68fecd791e62922b7360647d4bb *man/ModelSEIRD.Rd
0d477ee2eb25fab3eaef956330048cb2 *man/ModelSEIRDCONN.Rd
192883f257edb9031f87bad2ea924e4b *man/ModelSIR.Rd
54de9868a4c8897782f51b526c9f827e *man/ModelSIRCONN.Rd
69b6b0605b45d9cba791a7cb965acdea *man/ModelSIRD.Rd
d58ea8a6648c66397ebfd885e68487b0 *man/ModelSIRDCONN.Rd
a2f6f399f173176a234b6b707006b573 *man/ModelSIRLogit.Rd
fc12d482732750f4da031bbf756b8c88 *man/ModelSIS.Rd
3e35c584a846019b413f2987dc3354d3 *man/ModelSISD.Rd
4f4c5429a5ccfff7284c0e97c905b990 *man/ModelSURV.Rd
a489917bff1cfddf8f71b900a0687cb4 *man/agents_smallworld.Rd
2c9847169367ddf5f5f22a9e8a5752f2 *man/epiworld-data.Rd
b71fcb15361d86553515a6430ddaf3ac *man/epiworld-methods.Rd
d567bf39cd97a89d269e3ffe6213e772 *man/epiworldR-deprecated.Rd
2d4008f7d53e4890780d4fad535de6c4 *man/epiworldR-package.Rd
32cb276b6dcaf4f2afe9e06868a42cfa *man/figures/README-pressure-1.png
f9df02faeefbb0b0271f9c1bf5a92e5a *man/figures/README-transmission-net-1.png
b6f433502dcc42560b695ef8eee64f93 *man/figures/README-unnamed-chunk-2-1.png
5e9afd152f95dd615eb172a417121dee *man/figures/README-unnamed-chunk-4-1.png
6b5cbb0ca76d66a2277a2711856496ef *man/figures/README-unnamed-chunk-4-2.png
9ebd398c9547a7ddacf16c0a8e6d177f *man/figures/README-unnamed-chunk-4-3.png
f806692fb383ee7ff4d802b669ccec56 *man/figures/README-unnamed-chunk-4-4.png
1d34e59cb7a648a5ccb17e517cd03f29 *man/figures/README-unnamed-chunk-5-1.png
13a17353204b8c161348d693330b6be4 *man/figures/README-unnamed-chunk-6-1.png
c6a58205af660d75e6b88111446e4bfb *man/get_agents.Rd
89a135e9b50a7c8836581daa01b95116 *man/global-actions.Rd
9779b870e9bd70be4031053a7c12b4e2 *man/run_multiple.Rd
814a42c1a667c9919f0391d082f4296d *man/tool.Rd
9c1bcca6f8f43f0203535f7942047fcd *man/virus.Rd
efd5abbdff3847425b6560ec161f0738 *src/Makevars.in
a95163bceb448b0f265b4f7febba05fc *src/Makevars.win
b4551a8e37905c572dda3edd88295dba *src/actions.cpp
11d8265e4c7564d2140d84def0fdde7a *src/agents.cpp
e8840523d304b7077489a72f51943638 *src/cpp11.cpp
079335a9e6fd8dbf28e32f29c8226ee1 *src/db.cpp
929b95e48570760550abaa4fa146fe5f *src/epimodels.cpp
f3dc32c75ef7067e97e8bebc7d6c3acf *src/epiworld-common.h
b5d2e626ac619cf707e2872fb9356c59 *src/model.cpp
37fdde50573003f2e289b8c9783bd6c8 *src/tool.cpp
51ce5f7e02c9a8207c6e8758bc65c570 *src/virus.cpp
d716d895c96355906c46e78c516ca3f6 *vignettes/getting-started.Rmd
669c7e2ac32453a3731eee6a1c7e9600 *vignettes/implementation.Rmd
295e01aba3c5a34032de3b3a9334a5cd *vignettes/run-multiple.Rmd
