b1ac9479545409807d813fb8d3d225de *DESCRIPTION
691a45a3810b190ff64555c53ca03f99 *NAMESPACE
8f41acffe68735aa7449b5e66a9812b1 *R/add.everywhere.R
34423edfd64ed1b237c63a0364288bdf *R/add.random.R
f0df86c98d2fd0c6d76f49ca3172d129 *R/allFurcTrees.R
9e3fa7bb801b628a7026052364234602 *R/anc.Bayes.R
18bd5cb3a5cecf1fa1cad04cd6fbd2d4 *R/anc.ML.R
a54afd1cc9c251f5e00a5e8efc5ca924 *R/anc.trend.R
3ce097ddf9ce3d9e2eb38dd981baa22e *R/ancThresh.R
4b82f6c1cb6aedc36ed4fed7be987457 *R/bind.tip.R
cbc7784cba23e6b20efe0f2d21e1de3c *R/bmPlot.R
0676ff6e0a9c20313ef37088dcc65a63 *R/branching.diffusion.R
b95f8c330bf17c808ffbd2304da73ea0 *R/brownie.lite.R
e092561f7dba01386fe102a08a8024a8 *R/brownieREML.R
49e1155003564e047e67ff1f0ef0418f *R/contMap.R
79d98550c4e547d457612b66045952bc *R/densityMap.R
b707fc247b889daacea864a75e0915ed *R/drop.tip.simmap.R
451a5d01bd2ffd05ca11d9e253751eb7 *R/estDiversity.R
7469de53938ca9c617c767bc7ad5b807 *R/evol.rate.mcmc.R
f99319acc891e16d942f80b8b0febf12 *R/evol.vcv.R
b645683560ce499323142e5bb8917e3e *R/evolvcv.lite.R
164c5aba763c4823fae1a2747cbbdde8 *R/exhaustiveMP.R
9894f4104c7750ce0613c2794262d447 *R/export.as.xml.R
28ec4a671a39678907d31066a33fe3df *R/fancyTree.R
3051b0baa4d29fc964c63038f61a66b5 *R/fastAnc.R
bfe9d45e7a126e26d4ea0c10e7851350 *R/fastBM.R
0d3ae4cfb0e9fb73cf0cddc37d8d0fb7 *R/findMRCA.R
79d5c1bc8b38484815275308c3aa01d5 *R/fitBayes.R
984fab2bf406a04876c19b8d4d6e4ec7 *R/fitDiversityModel.R
845b53ce3f60f6ed7d3728a67da0ecfc *R/getExtant.R
1dd29274a867dc1643a706f932bb1c82 *R/ltt.R
1a57f7ae8dcf530cbda30b282d513aa0 *R/make.era.map.R
f03577055e63707a16d4a9ebff615a08 *R/make.simmap.R
23b9e915f9fc8b9c46d81c573afbbedc *R/map.overlap.R
bf6c23b046ed30ee9e9183582aceb070 *R/mcmcBM.R
659b234e9ff4b00daa511a06f72d53d2 *R/mcmcBM.full.R
9fc1c1054aa693a9ad32044d21e9f8c4 *R/mcmcLambda.R
b040e1eaf64ad302cdbbc1c0cb742cd7 *R/mrp.supertree.R
7e33687b42d9ee02d52ae36834f4c122 *R/multi.mantel.R
af3ee4b2e3a749a9d0040ca6fceb40a5 *R/optim.phylo.ls.R
39dcfe7cb658f1d4cf9ad3f8fb0fbd0d *R/paintSubTree.R
e8770dd2a3a586983f9ad3312f15738a *R/pbtree.R
ab294d8c9b023fe314930627be675030 *R/pgls.Ives.R
6593779f3ef1a01bcc13523637e16546 *R/phenogram.R
4db055cf75d6a3d2e7cda5a91cafd137 *R/phyl.RMA.R
d98d7bec0847aa686ef9b37b044489bb *R/phyl.cca.R
067743180672ac2b90d1e160186fe0de *R/phyl.pairedttest.R
c9f68d7c48ed3961941c58d5059404e3 *R/phyl.pca.R
6eb0e229b575c66b578eb9e3de320e4f *R/phyl.resid.R
c1aaeb796e42be5177ecb36c5a6df15c *R/phylANOVA.R
cf18e474abb93c2db85778f19693f460 *R/phylomorphospace.R
ab5521021127b8b4dce1504d8c90748c *R/phylomorphospace3d.R
2771f0713c2aae54eb30ea78096f738b *R/phylosig.R
b27f2a63df78b02c9aa737f2b8c07f3c *R/plotSimmap.R
03eee952ad6300e7fa50dfd91b42ee19 *R/plotTree.R
20d93417514de8d6caf78fe4f71fc33d *R/read.newick.R
1e407635f553c7f6d95df99024f3199a *R/read.simmap.R
0c233034935b1d82fdf6f8d029a753bd *R/reroot.R
c4e18ab88f3a37d448971b81de4fdbfc *R/rescaleSimmap.R
afe6e31be39046604a479f8180ddb100 *R/sampleFrom.R
a734b9387333dc2d9a5ece1f8ee06f98 *R/sim.corrs.R
93eadaa496ee4f08c105476ffdac92aa *R/sim.history.R
f21071a47bc22c9c76ef3136ff4fe821 *R/sim.rates.R
81c463a99ba91e04785a4848d2e5d56b *R/splitplotTree.R
c8bfa07dd3238d97fcaafe5a369e5e89 *R/starTree.R
ae99c9aeb8f0553d3addf1475ea35562 *R/threshBayes.R
a38bac98b4681cee859750b8193a9a9b *R/treeSlice.R
c52e4f853adedc2bb2b70cb15785b129 *R/utilities.R
c6fdcd385bd2cb7778a9afb90465ef02 *R/vcvPhylo.R
7282f87b3143db28b7e982e86d90b6e5 *R/write.simmap.R
c6d9cb0dbedb17c4cc0d4e16032da623 *R/writeNexus.R
b882d12a50b9f13670b5c4c3c8277353 *R/xkcdTree.R
a78ed25ad6214b1722858e7289d3d3b5 *inst/CITATION
0c20d95b69a8a7e4749d29cfbc057d9b *man/add.everywhere.Rd
c25fd361708ffee10464ee9d74ed129f *man/add.random.Rd
11d595e751b77ad047b23a2f11ffe8ac *man/allFurcTrees.Rd
3ef1ab671f7543f13c51eeb67310ad2e *man/anc.Bayes.Rd
5ba74f8c7f36ff6fc9d77b6a8a4d300f *man/anc.ML.Rd
d643181a570733dd04bfb342b3f06fe2 *man/anc.trend.Rd
7ff7dcdb419b393598bbd3445e568c1d *man/ancThresh.Rd
1ad4c8aef29dcd52e41e647f8637817c *man/applyEdgeLengths.Rd
89af25534419d0f64bbf03ce5434dc4a *man/ave.rates.Rd
ddfc19e049b5fa61d8410bc5358674c0 *man/bind.tip.Rd
df10aa4cbbc4ecb9cbfdb27854d3b61b *man/bmPlot.Rd
2bc00bc310a92030c6473c0b17e5b53a *man/branching.diffusion.Rd
6fde67453b8f53e21f94691034a91e8c *man/brownie.lite.Rd
4e0d62b8caa12be3b954b7bf2b8993f5 *man/brownieREML.Rd
60b9d3a1fc34c1c666525124b00360ab *man/contMap.Rd
6cf026b8da359bfccc5a4fe7d1c4d3df *man/densityMap.Rd
9ceabd15dc852774105aa8942c97dd7e *man/drop.clade.Rd
dbe4cfdd66305d7e4dbcffe487daeed9 *man/drop.tip.simmap.Rd
51cfbaf12c184c35c09fa750ab04a75a *man/estDiversity.Rd
9b00c73ed626be5fca9c5553ed485e87 *man/evol.rate.mcmc.Rd
65c989ae110ef0836adbcf065f8a7e01 *man/evol.vcv.Rd
e85d60b775e2ea67798b6291478c47f8 *man/evolvcv.lite.Rd
c340579b16cd2aa0487488dcdbd29170 *man/exhaustiveMP.Rd
99aa2f3b5bad4e815c0b719ee2bba455 *man/expm.Rd
158e0b50e75820354900e724889e74b9 *man/export.as.xml.Rd
e0465f250b418c2daa21d2ac6436530e *man/fancyTree.Rd
a486ae9eec860aaed652a9c0bf491c8c *man/fastAnc.Rd
8e69de43794daacdcdf22000e1db46b1 *man/fastBM.Rd
847d5a3642edff1abaabd822dc14ace0 *man/fastMRCA.Rd
05cc813332b74f9076a3e46ec55bf222 *man/findMRCA.Rd
48b4575470b9a58c8ec00407401489eb *man/fitBayes.Rd
55d76c8186c4ac5cf2f7af0ccde811aa *man/fitDiversityModel.Rd
35036b3bc42cb12a62b88502794463aa *man/gammatest.Rd
1fd15be1311a88cea40356951a97dc23 *man/getDescendants.Rd
bc7ce1d3742a7aca8c2a4d4c11ca4798 *man/getExtant.Rd
8c77a108d6d851ec836139518633184f *man/getSisters.Rd
b7341a010735c5854ea729e68139d728 *man/lambda.transform.Rd
b05f73d33842796901da99bdaa753dc6 *man/likMlambda.Rd
f2dcb1f3f579ef58109eddf152d2d44d *man/ls.tree.Rd
310106f2456c5a8792d14e10f90c84c4 *man/ltt.Rd
59eea7d2a4206358d61b2d6290e363d5 *man/make.era.map.Rd
336d6ba1d9ed5e96b04ed9419c956ba7 *man/make.simmap.Rd
134adc93c1a331b21c2d1d7c6d17bc9a *man/map.overlap.Rd
a4b3234e2b8652bd53b1e5c42c2521d9 *man/matchNodes.Rd
af46089bb0662e8beeb52fae220429e8 *man/minSplit.Rd
83c63a93669f9d520a213fba6a007440 *man/mrp.supertree.Rd
216344ef297625f817e5f38ea4d4cd5a *man/multi.mantel.Rd
addc81cdf4c97c420568d3a129cfee79 *man/multiC.Rd
aa96e4f79c6603541eb266e7851836dc *man/nodeHeights.Rd
c53e471440bbef973d577ae3c1d951fe *man/optim.phylo.ls.Rd
26f97c95856842f405cae55d8915c9f6 *man/orderMappedEdge.Rd
ac43988d460a4169380f2b59146062cb *man/paintSubTree.Rd
0a9ad1e536b6eb0d089441eaee7557fd *man/paste.tree.Rd
5b9fdc86c6d9070b9dc1dcb708556cca *man/pbtree.Rd
66659e729577384d3e32967d21b36ea7 *man/pgls.Ives.Rd
ac3481fb78e9ad0fa1e5f857b3653f89 *man/phenogram.Rd
68193b147f0080728ed49ac0690f95ad *man/phyl.RMA.Rd
5c8338cf79f534735ec263870cbaee2d *man/phyl.cca.Rd
e46a28e0021f1b161a2ff803dc3df78c *man/phyl.pairedttest.Rd
5d94a45fd5b282b1d343d321a7d40c53 *man/phyl.pca.Rd
c37f996138a60fba8c32995f8ca344ff *man/phyl.resid.Rd
a4c8f69f99a93d82f1fe839174da165e *man/phyl.vcv.Rd
552e734c0db8048b0587a8f739bfb4dd *man/phylANOVA.Rd
2e39afb0137ae8c1729ce04491f6ae9f *man/phyloDesign.Rd
46e5074464bf913be84a1cf290fd35a8 *man/phylomorphospace.Rd
bd139bea0fd60cdc8d969d64f3ea1ab6 *man/phylomorphospace3d.Rd
f0d0a3c0717765653efb8bb0eb2b2d44 *man/phylosig.Rd
f5d40108e3f07ffa9cb8f3a46d45dac5 *man/phytools-package.Rd
60c6ebd75333a0da87c2af531b1adb1c *man/plotSimmap.Rd
5a5dcfa23e18d176d948bfb8d8eb09d4 *man/plotThresh.Rd
cb747557f2cc922eb4b574d81927cc5b *man/plotTree.Rd
e8485d0253f67bd9cd7103849c207679 *man/posterior.evolrate.Rd
4c2edcd3c63e27423397a90f158a4961 *man/read.newick.Rd
8f2122d45212d27c74f80a004c6cc5e0 *man/read.simmap.Rd
bbf488efac4531a0f06915abd93b69f9 *man/reorderSimmap.Rd
7fb814bafcdcfbee8c836a410ee275d0 *man/reroot.Rd
9c26f56f5e02cadc67db5104071aea20 *man/rescaleSimmap.Rd
8d605598ce2d97565f1fa808e068f210 *man/roundBranches.Rd
64481885746963d3a93a53e9faf5be6f *man/rstate.Rd
a09b4eed3b6b5e0e6bb6c01b9aef1094 *man/sampleFrom.Rd
daf8c1005bd9871e83d2e2a1331307ef *man/sim.corrs.Rd
fccf9afd33be3e4dcf195d5228a70921 *man/sim.history.Rd
799d8ee477fbc51123b825f2ec69566e *man/sim.rates.Rd
4a75520bcd1ed4c9a5e86dba503cf372 *man/splitTree.Rd
23fd3ae61df1ef7353eff7174e2bc355 *man/splitplotTree.Rd
4b9695fd93869757fe2bcf6fb9bf9cf1 *man/starTree.Rd
7e1bbe39f9f4a98ff17fd1517ac78300 *man/threshBayes.Rd
bed6b46a7a9a53efdb315eda263e96bb *man/threshDIC.Rd
b82b2a0b1c996f10bbf8dcc8c10780b8 *man/threshState.Rd
e58c22874fa935ef93ab82b49b7e5883 *man/treeSlice.Rd
db214ebc9d2bf08f1a797f0b0adb8df6 *man/vcvPhylo.Rd
d94cebae5fe83040590f0b9911c95f5e *man/write.simmap.Rd
afa1b296b869f91e3086e2efecf7a7f8 *man/writeNexus.Rd
01ef3ae7712b5fa0df67f2abc9c222fe *man/xkcdTree.Rd
