80ae60a9f1b0394c5383e1e995a9747c *DESCRIPTION
f434718bffa4976e988bc928dab7d280 *NAMESPACE
6624cd4141f0e09f80d5361585c87512 *NEWS
2d2cb6434dfeabc9e79124635a61e58d *R/alunll.R
ebca819c2f20d3569bb8e95b25c7ad32 *R/convert.R
ad57022748f2d2d8161435f7a443bcc0 *R/metrics.R
f06d4d256eb5ccde790e4729772d86b3 *R/ml.R
c89b205606fea2850f0a42fe9f17eec2 *R/time.R
c198c91dc2908dd24839a5a71e7596af *R/utils.R
f1db1a114d46413acf54f5881a735c58 *R/wrap.R
64cb1e8aeccf71db48371457a6ba38aa *R/wrap_sim.R
fb8d0d49ae48d2d480f2738a05429629 *R/zzz.R
a0fe678b7cdacba45c16c85b0fbe76a9 *inst/examples/basic-ex.R
6f56a8d1cdec2ef63a7985cdeff8f8a7 *inst/tests/test-indifferent_to_input_format.R
32193c4f41ff771d0f06f2a3aa330c17 *inst/tests/test-likelihoods.R
0846d02742acc9a2950a664bab36829f *inst/tests/test-loading.R
c71ccbd2055c2ba473c14deaca7087f2 *inst/tests/test-reproducible.R
e988a06053ba76ff5f555ab0b24e61a0 *inst/tests/test-sim.R
23fcb4b5e95c4f6e96e50d86a25b854e *man/GetFullDataLikelihood.Rd
0d14b60d2a429a1d61377388a8b8e2a2 *man/MaximumLikelihoodEstimates.Rd
f5e776be145e3c28513363572aff812f *man/Vswitch.Rd
c92c99b86423fb2ca4d179f354542e0c *man/alunll.Rd
1d00f653c03d5cc7fa94efc5cbfa7ad6 *man/computeIPPD.Rd
c2986929727aa764bfbaedeb51892ec8 *man/computeIncidence.Rd
d375ae5e0624d5483f6e4d561231d854 *man/compute_patient_days.Rd
c037fde646a97686424d60119bbd463b *man/continuous.Rd
9eed2ebfa04b5d240553987363f43cb8 *man/convert.Rd
846fa094ba380bfe66fe9ec532af4bb4 *man/event.levels.Rd
a13c841e92e5e89716b0789a2d6d6ad2 *man/formatTime.Rd
9e6d6b072fb4486924e5ac1aa065478b *man/helpers.Rd
cbb46a5e40ee1c52aaf27cce65c1cc00 *man/iutils.Rd
0b6a60e6b3bfe2e4960bb823fda5b631 *man/mcmc_chain_plot.Rd
a2fd10115fddd5f6a0e5e66792e0c948 *man/metrics.Rd
9b664e3a3f383a2a59758068650d4468 *man/print.proc_time.Rd
d60c94d21ab2c647efc2f8c79f95bef9 *man/simulation.Rd
6cb05f5f323dcb92c289f795a10ebe75 *man/tmMCMC.Rd
ab44d5c2b480d4bc184c120476bd6bec *man/transmission-package.Rd
5db9752d830e757d1dd65a635063beb0 *man/utils.Rd
de2dfe7e68525b91a5d709a27aebf1b6 *man/variables.Rd
aea4f50d0a498847cfb133b89bcd9c46 *src/Calculator.h
8c73c2b1712731db264e9b194b295dfb *src/Event.h
0aabfb436b33cd06ac9c2d1b67e99730 *src/History.h
60b911dd3a1a5b1b4c5d5931d0553e88 *src/InfectionMCMC.h
e0b7174fbc6d6a94ed0b6c3c34ad0433 *src/Makevars
6903b12e464ed3ae51379ef916cff924 *src/Makevars.win
3b3ec6be5d5c9ca5455c715d93f3046c *src/ParameterSet.h
7896d44f82a73d1c56155204aa10576a *src/RcppInfection.cpp
1c5a4c917b169235dab0179cac8e2e6f *src/Sampler.h
2df4cb9eba739fd5e949cf1dd2d771f9 *src/UnitHistory.h
d5781c1aed64421d341a73bba1a47048 *src/infection.h
42e2b723c23bc33cc443917d8650c134 *src/sim.cpp
e8d93cde8977596ef0f9389139869685 *src/sim_event.h
ca538fe68b903258ede7cdded14e2663 *src/sim_patient.h
5f1a8ec8aa932db6cea4f9c1dc67e17a *src/sim_test.h
30ee7054dfe2c1b38f0799c7f48f4b10 *src/sim_ward.cpp
a92577ffdafc5409601f6c66fa49fcee *src/sim_ward.h
e57868f553cdced83cb602e996bb50ef *tests/testthat-package.R
