89b195c9d63e96daab55ba41e70bb31e *DESCRIPTION
a70385c8584628e4d79e932e2e230959 *NAMESPACE
b4a7758d59fc81076092592b08024890 *NEWS.md
607ca08ce9018b9d165030bed8581a14 *R/alignBurstSeq.R
161cd4103ae9a1b65cd3680ed25e59c3 *R/applySync.R
70384e6066021b76fa6de6b1cfb18d94 *R/checkInp.R
4d2dc025e6968dfd8eb59c865786ea53 *R/checkInpSync.R
6b1f49dce457ef9c1dc11bcfc849b95e *R/data.R
f2edf114039697903547a84d3660e0dc *R/fineTuneSyncModel.R
2554942ff48b55b68bdd6cac40c77ff5 *R/getBbox.R
9bf2ad3f7fbbfa42c583575985c97fc2 *R/getInp.R
836efef8768bb8bad2c25f114067838d *R/getInpSync.R
d74960f57fe83077db534cd9bf3679ee *R/getSyncModel.R
634a26d2eb1379613c184736375f3d4d *R/getToaYaps.R
e1a2354a0ab769a0f08e0b4908da06c5 *R/pkgHelperFuncs.R
1d176ebfb6b2c0956fb4829045ef7da6 *R/plotBbox.R
f084ea5a70cfa542a855eca9fe980e29 *R/plotYaps.R
58a989c002d16e11410dfa72f3d58988 *R/prepFiles.R
b59d7f0b00cd41a4305bb3e0f8f5ae87 *R/prepTmb.R
160a2d5fc08201fbc258bc6a7e807fb0 *R/runYaps.R
54dd7b0231b60b90114fa6d4542592eb *R/simTrack.R
c04a6ff65a62ddbe88f182713c9885d6 *R/syncGetters.R
f529b0f6ca9b2860b31f4c303146770f *R/syncHelperFuncs.R
bd596e121a883a1f46c93b6841a7ac3f *R/syncPlotters.R
a38f72757b8d49931da355aff0d4d372 *R/tempToSs.R
13881aa5e19bfd740343ca0165c059d9 *R/testYaps.R
7eedae1a51490dcdc2ffe0d8dcc52df0 *R/zzz.R
1a3daab6205e1b58136562dc65e2a09a *README.md
74fefefb96b501dbed29b4892365f091 *data/dat_align.rda
5fb7e598615561a03ed47146edfe4061 *data/ssu1.rda
95f1a8bdf4bca44695a1fb1f14a8fc2a *inst/CITATION
e07065796c28aef057eb85caea53be8e *inst/extdata/VUE_Export_ssu1.csv
eccf2f7ad072633756e87fb149838c0c *man/alignBurstSeq.Rd
cd00753067fec2591948e6190eefd55b *man/applySync.Rd
579cfe6186cf0cbbdc981424ab881e43 *man/checkInp.Rd
72c9b9d8a9d9d0227d3615a6567aafd1 *man/checkInpSync.Rd
ebd06a5d5057052a8d5176370537a7aa *man/dat_align.Rd
74ca740242ad15cfb18496a435b4947f *man/examples/example-alignBurstSeq.R
899afc53ebe826d68dca5bd246ba4949 *man/examples/example-bbox.R
18dbfec672c8082cf847b618fb3e1fd7 *man/examples/example-plotYaps.R
fb3894fe4e4d2a24bf03eaa65e6e6c5f *man/examples/example-syncModelPlots.R
cb01175ffebb1957acf2fcb6014a6c24 *man/examples/example-yaps_sim.R
947e03de12c03fee1a3d6a9ab9b1826a *man/examples/example-yaps_ssu1.R
cacdc01ab4e5dd8bb4545db5cc3fa4a5 *man/figures/README_sync-plotSyncModelCheck-1.png
ecda9e31674cefddc6f3aa7701831dac *man/figures/README_sync-plotSyncModelCheck-2.png
0d5c95ca27501ce8c9dc0a70b9b92465 *man/figures/README_sync-plotSyncModelCheck-3.png
74be22c28f1f0a0fe73ece3a938afac8 *man/figures/README_sync-plotSyncModelCheck-4.png
ea2332cf002954303ae73b9b80a7034c *man/figures/README_sync-plotSyncModelResids-1.png
cec6c5e1304c2beeb991a0acd398ece0 *man/figures/README_sync-plotSyncModelResids-2.png
f7717f0af49637f9528792c325d00bd1 *man/figures/README_sync-plotSyncModelResids-3.png
8de0ea561d2ef1a9fbc1a639797643d7 *man/figures/README_sync-plotSyncModelResids1-1.png
a7b211595ffa285f515ea610b6c15252 *man/figures/README_sync-plotSyncModelResids2-1.png
b1dc7aa964c8de29028f5968b4ac5f36 *man/figures/README_sync-plotSyncModelResids3-1.png
9c7c6aa47e5efdc9af721a384018f55a *man/figures/README_sync-plotYapsOutDetails-1.png
ca9febd67be0f2363995d13c6f584ab2 *man/figures/README_sync-plotYapsTrack-1.png
5003459b145d4d2d1d4bb012700f986d *man/figures/README_sync-pressure-1.png
7e6a7f8488f29af940c361d91397dff2 *man/figures/README_sync-runningYAPS-1.png
abf2f7a926a28cd923640fd3fbd5855c *man/figures/README_sync-runningYAPS-2.png
baf59d39f00a59300aa5768c530cbd3f *man/figures/README_sync-runningYAPS-3.png
b5d4d210fa5c413304113910f63d9849 *man/figures/README_sync-sync_ssu1-1.png
771ac0ea69e3b0f96b02d89c3744e4b2 *man/figures/README_sync-sync_ssu1-2.png
a9c1628dd27203e520f8006fd02e5be9 *man/figures/README_sync-sync_ssu1-3.png
e31e56c85c51db6ce41ba095e47cb35b *man/figures/README_sync-unnamed-chunk-2-1.png
288b5d0e92042ce573dfde6fb2c7dca3 *man/figures/README_sync-unnamed-chunk-2-2.png
d1aa235d32267714126924a9e0be683b *man/figures/README_sync-unnamed-chunk-2-3.png
649f4cda15492eeecac56eab246f98c7 *man/figures/yaps_live.png
4a060ad9e5acad61a7043f1001e79bd3 *man/fineTuneSyncModel.Rd
e1929095b1dd493ca038fe437fd011dd *man/getBbox.Rd
d751934efac980e67f3827723e083ad8 *man/getInp.Rd
4431067d66e7b92133e2858578f83d7a *man/getInpSync.Rd
ab27706ce8fb4e2899f98f31c19bbd76 *man/getSyncCoverage.Rd
35934960600a41decaf70c8205c3a342 *man/getSyncModel.Rd
e329885385900cfd42da6e1c48251ea4 *man/getToaYaps.Rd
840e848b7f6231722d392c833547d10b *man/logo/yaps_logo.png
580950a15534c589625b8a81b472429b *man/plotBbox.Rd
27bd3b6f3a3db46365001630e67c5b16 *man/plotSyncModelCheck.Rd
dcaf69054d20c50ca0f7403ea6516c63 *man/plotSyncModelHydros.Rd
8a06708d4e1216e5647fb40eaedf845a *man/plotSyncModelResids.Rd
820b085c215bff823fb7d110317f1933 *man/plotYaps.Rd
e77d21cda961ee3b5f3855f9f5bcc973 *man/prepDetections.Rd
ec770c163221bde5c592755631f26ae7 *man/runYaps.Rd
0d6ac87233b7dae95d43f4a5ac4763a2 *man/simHydros.Rd
05747a37d56a75addc29eb57e4cf944a *man/simTelemetryTrack.Rd
5c8537cf16028fd61744c2d83553349a *man/simToa.Rd
e391331d604329eea26a9aebe5174f5e *man/simTrueTrack.Rd
3ddc9be1d331036e4af77701f32d0047 *man/ssu1.Rd
dd1fe983b8042f3a7aa5eb5340bfa892 *man/tempToSs.Rd
317a72f8e9625fa050bdc39d97fe62fa *man/testYaps.Rd
1d0d45c18a68c9c44c59c35a20d8e11c *src/dist_mat_3d_est.h
04dbf34af8a1be89270e1176e3a784ec *src/nll_bbox.h
7bfcc8e5558f87bcfa6c7a14d30b945f *src/nll_gaus-dist.h
1d2677e87c86e851464a71ef74d707b4 *src/nll_mix-dist.h
7e328d0cb4b3e2c2251d10fb98a10b45 *src/nll_pingtype_pbi.h
b21aa25f0f24c575e8ae6294433573d2 *src/nll_pingtype_rbi.h
e3f9f92a9bdb60263cdb861166a5f5ad *src/nll_pingtype_sbi.h
23dd8d42ed1a797bc16f17ff292639de *src/nll_ss_data.h
5c5b2fc74c1f751368b8e2d531701dd9 *src/nll_ss_est.h
6ab85470bb0439f0258cb33e1bcbf8dd *src/nll_sync_ss_data.h
2556bbdd62f016e7cc6d7a4519c8da29 *src/nll_sync_ss_est.h
120dd956596acfe0a6e23157aeaf0840 *src/nll_t-dist.h
fb2d65c7bda4ca1b48144c514a5ebafe *src/yaps.cpp
d3b5f4957a02738a7307504b9c088153 *src/yaps_sync.h
a31347dd5052772fd4c83e33e9008461 *src/yaps_track.h
a46cc250b605bf4dbf7cac1feac488fe *tests/figs/deps.txt
7a6ace51dac4fa3f665e5d2486ad529a *tests/figs/syncmodel-plotters/plotsyncmodelcheck-by-hydro.svg
f8fc8d596957500d62148edc32f0b43c *tests/figs/syncmodel-plotters/plotsyncmodelcheck-by-sync-bin-hydro.svg
6bd110f3e49934d9f7879d310ef160f4 *tests/figs/syncmodel-plotters/plotsyncmodelcheck-by-sync-bin-sync.svg
08147b1c26edc9164f860098d64d656b *tests/figs/syncmodel-plotters/plotsyncmodelcheck-by-sync-tag.svg
56b4c4fb64adce56b592cc0273b98ad0 *tests/figs/syncmodel-plotters/plotsyncmodelresids-hydro.svg
d49c51e389476d4fcb4ac91f44513a4c *tests/figs/syncmodel-plotters/plotsyncmodelresids-overall.svg
c338b345624fdf32c353589fb7fb57b8 *tests/figs/syncmodel-plotters/plotsyncmodelresids-quantiles.svg
8b6d45941e7146d7250453387d9b980d *tests/figs/syncmodel-plotters/plotsyncmodelresids-sync-tag.svg
3f199473905875cb7b145992336d5be5 *tests/figs/syncmodel-plotters/plotsyncmodelresids-temporal-hydro.svg
f56d1881600fb7e273c7be807b00614d *tests/testthat.R
72f205c0730bb5fe7f95708ddc56a17b *tests/testthat/aligned_dat_ref.RData
012390b9b3f750eddbf606dd07645106 *tests/testthat/sync_model_f1_ref.RData
c485255e803c1b4b7bf54eee5480b86b *tests/testthat/sync_model_ref.RData
825c46745f20930f562809200a2053b7 *tests/testthat/test-alignBurstSeq.R
59282fedbbb7917285dcf080225103f7 *tests/testthat/test-getSyncModel.R
9491909097965f85280fe3fcef74711a *tests/testthat/test-runYaps.R
a09dcff59d43ffb782d1364e3aaa5688 *tests/testthat/test-testYaps.R
934bb2f74b429579b2255f33681b34af *tests/testthat/test-vdiffr-syncPlotters.R
0b453f2351b1cc90addbbcfcadb01c60 *tests/testthat/test_out_nloptr_ref.RData
192bc015d4014a4daa00ca5f3dcf6824 *tests/testthat/test_out_ref.RData
61aede17ce93595f9d4fdc1970dc43b2 *tests/testthat/yaps_out_ref.RData
