009e39b7b63dc67e38357eed99f6cb3a *DESCRIPTION
c073e7c59cdcf5a81a821077ed2acce9 *NAMESPACE
d8a6f543a1051e371c6b700e52514bcc *R/DEploid.utils.R
ca35c56c0c379f292f8fab68b3a19f61 *R/DEploidR.R
7efdf7afe8931c93c9c3cdf32a85fb6b *R/RcppExports.R
1b60275c51b472bd63fb54f1c0db90b1 *R/dEploid.R
c7fdf848c05892a3b65610a0a4404c40 *R/dEploidPlotly.R
2e554abc31fdd013a0d5a95a820a1c65 *README.md
f65e30bb648f7349c04f521468d3e06c *build/vignette.rds
8233fb7a16b716421a81675a362123b7 *inst/CITATION
8551cf288f9027b06545e11d76d4ed62 *inst/doc/dEploid-Arguments.R
bdf6b60eb39c3b1c87a6b1d1f00163a9 *inst/doc/dEploid-Arguments.Rmd
b7b7e3a04fab7bd5206557935119290b *inst/doc/dEploid-Arguments.html
2cad08193815864d8a26f8ac768ef199 *inst/extdata/PG0390-C.test.alt
07eccfaeb952de9e0460bcc12d457b22 *inst/extdata/PG0390-C.test.ref
cdc601c1d8d4eec2bc80512eb8ee6b6b *inst/extdata/PG0390-C.test.vcf.gz
a18778772a21e2614f37800bf1e3d22c *inst/extdata/deploid.png
d5122a085c423ba8bdeff856b6a6f768 *inst/extdata/labStrains.test.PLAF.txt
a865c12e4c27f049106f134b695a0b82 *inst/extdata/labStrains.test.exclude.txt
58b29caf285f90a0900f2b04443ec465 *inst/extdata/labStrains.test.panel.txt
38a0b3d0bd6952b5face2cdb68370925 *man/DEploid-package.Rd
a7dec0cf819f7b734569760e93f0a0df *man/dEploid.Rd
80867188513b6416b307c4c9e3a23b05 *man/plotAltVsRefPlotly.Rd
482d86c43088ef6e6113d29ae3cdbabe *man/plotHistWSAFPlotly.Rd
efbf386a178605559cb6df87dea2e7d7 *man/plotObsExpWSAFPlotly.Rd
71bb0a6c982a77877c03c024094b11f6 *man/plotWSAFVsPLAFPlotly.Rd
e7273e9b05abb30aa6484bd6d272ed68 *man/reexports.Rd
8c1b9b16ff0e47887242926bc0f6ce53 *src/DEploid/chooseK.cpp
3161cb5ed21dc853ed2c5e0f121fb4e4 *src/DEploid/chooseK.hpp
0ded25e0cd4f68187923ceeadf1445ab *src/DEploid/codeCogs/asympt_expn.h
4789dcf7e8b8c22c7b15331f68f77556 *src/DEploid/codeCogs/errorfn.h
8eda5f08589cbe377e2c11a7461141df *src/DEploid/codeCogs/errorfnc.h
7fdb402bead7bb8479290867ff6900a7 *src/DEploid/codeCogs/errorfnc_exp.h
dd8dd57dee7f3c8d2b45dbf03e8c5163 *src/DEploid/codeCogs/expx2.h
62d356f46b779109304a8f3caa833271 *src/DEploid/codeCogs/gamma.h
5a369c47236d061678c4e2ea954a0866 *src/DEploid/codeCogs/ln_add1.h
1b744d27a227f7cb778275d859d0e6a8 *src/DEploid/codeCogs/log_gamma.h
7a06377dd05940bededb52c9222de834 *src/DEploid/codeCogs/logbeta.h
4d3024ecd41e77f173a95d7ff2bc55ee *src/DEploid/codeCogs/loggammafrac.h
608e03a901f0b1938148406033aa091c *src/DEploid/codeCogs/loggammasum.h
ae7e51c1268072067ffb113c577f5bb6 *src/DEploid/codeCogs/machine_epsilon.h
ccec2bc4b1d1436416711e52b16ef3e0 *src/DEploid/codeCogs/mersenne.hpp
2f8d156a5ffa6d1f3bb302af68b59090 *src/DEploid/codeCogs/poly_eval.h
3ba8122e26b392c415edec3c7b3ac888 *src/DEploid/codeCogs/randomSample.hpp
859b66c13713f030625889a645675570 *src/DEploid/codeCogs/stirling.h
a3585d8d0b267c7076cc835be837bf5f *src/DEploid/codeCogs/xsub_ln_add1.h
554413d7e050d377e014b7cc449a6802 *src/DEploid/dEploidIO-operation.cpp
1e03be6ce0b6f4c98e627d5b4a1ba101 *src/DEploid/dEploidIO-workflow.cpp
0d5cf319d640d3cbbedb5b5cc0be8952 *src/DEploid/dEploidIO.cpp
862d1b79da82694fa6c1b8963ccfa89c *src/DEploid/dEploidIO.hpp
0c2e7004550102d85c2ebc8700df316e *src/DEploid/debug/mcmcDebug.cpp
039178db53dd20ea3fac04652e6b9db8 *src/DEploid/debug/vcfReaderDebug.cpp
22cfe6e3da4288e1fd96ac71bbcc9aca *src/DEploid/exceptions.hpp
9d1be5fe2ae542f0d2712c40ce35a406 *src/DEploid/export/dEploidIOExport.cpp
786a1d8d580f41f5e3641b2ce1b68cba *src/DEploid/export/dEploidIOExportPosteriorProb.cpp
452e13fe4ba670f2de55b1e1451e7808 *src/DEploid/export/writeMcmcRelated.cpp
2bfa262ffc355802a21f5c435c9124a2 *src/DEploid/global.hpp
32664446f7bd4f6e0bb71548ac0ec1d4 *src/DEploid/ibd.cpp
e6a7d41b98a99f5d0937cea7b397e90f *src/DEploid/ibd.hpp
be3900f55cf510e4011fc09aebbd469e *src/DEploid/lasso/dEploidLasso.cpp
70b70d4a42bfa2673e799f8eb6697576 *src/DEploid/lasso/dEploidLasso.hpp
8d7d21d3dbfd7eeda6783eeb172dc00d *src/DEploid/lasso/dbgmacro.hpp
b1243a1e6ca579543c49bc30cfd79dce *src/DEploid/lasso/lasso.cpp
e77974455e21e3fbc36f3d66a1464cc3 *src/DEploid/lasso/lasso.hpp
a60b6085198e7396d5392472e7d8f3ad *src/DEploid/lasso/lassoDBG.cpp
25838ce7135152cc75c3f07910eb49da *src/DEploid/lasso/src/dEploidLasso.cpp
70b70d4a42bfa2673e799f8eb6697576 *src/DEploid/lasso/src/dEploidLasso.hpp
8d7d21d3dbfd7eeda6783eeb172dc00d *src/DEploid/lasso/src/dbgmacro.hpp
03b4b4ed9f59e5b323be6709dee187dc *src/DEploid/lasso/src/lasso.cpp
46061222bfd5d5fdc6c013b5bcf6a527 *src/DEploid/lasso/src/lasso.hpp
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84dcf4a918f976f8a6fa59e2de905949 *src/DEploid/lasso/src/lassoOut.cpp
806cb8d3c8f627198ebfb306d2d19a4e *src/DEploid/lasso/src/main.cpp
0ab6649a2d15a0c8bcd0c1493e86e404 *src/DEploid/log-double.hpp
5f2c1dc2fb23cf540950cf390ce5a9db *src/DEploid/logsum.hpp
b2a1d6a7ae5f473d50869b043104dd96 *src/DEploid/mcmc.cpp
1bd8db775ef042862009139a3442bbb9 *src/DEploid/mcmc.hpp
8f7e38df01fd30b1b447250ff3aee5cc *src/DEploid/panel.cpp
c503ba8dda5fbc26c723b4131b9ff218 *src/DEploid/panel.hpp
f8d04afce64226a19902a1144ab2f106 *src/DEploid/param.hpp
a6765fb4db45924b1d3b2d7ed6d5b0ae *src/DEploid/random/fastfunc.cpp
d83fcae2e9ab95e7531917dc5aa25ce5 *src/DEploid/random/fastfunc.hpp
d7ee5456f67c91bd7da907001965dd72 *src/DEploid/random/mersenne_twister.cpp
5c40c783d72b75abcd7a5264a74d4c1a *src/DEploid/random/mersenne_twister.hpp
9563d50543ff7687795b66906c787a9f *src/DEploid/random/random_generator.cpp
ad21a81bdcb9369d4c7f9b2d54cb37be *src/DEploid/random/random_generator.hpp
c164ec08dd6ed4c7512ce0617162ff0e *src/DEploid/updateHap.cpp
c86b3dd2e2573df758a61f3a518461ac *src/DEploid/updateHap.hpp
aebc229c4f4013de6d121ae55fa747f4 *src/DEploid/utility.cpp
bff60839fa028e61919ee431e1081a2a *src/DEploid/utility.hpp
d2bc5f2b45a4fa318526806d2ac08884 *src/DEploid/vcf/src/exceptions.hpp
2bfa262ffc355802a21f5c435c9124a2 *src/DEploid/vcf/src/global.hpp
7fbc338309ac38fefcd64b04bb903e34 *src/DEploid/vcf/src/gzstream/COPYING.LIB
d632447d46c9b1d6ab0103de7a665034 *src/DEploid/vcf/src/gzstream/README
ba512bdbb2404b95b4303f226f9d8ef8 *src/DEploid/vcf/src/gzstream/gzstream.cpp
068fd831bb8356b27564acfe1fd9ccb4 *src/DEploid/vcf/src/gzstream/gzstream.h
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72767782fc756a7855f92361e949b499 *src/DEploid/vcf/src/gzstream/test_gunzip.C
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11ee8ff7e7c7f0ef99287c80b09a7c80 *src/DEploid/vcf/src/main.cpp
bede5d3cd40d8a655793634e9e527a33 *src/DEploid/vcf/src/txtReader.cpp
d91e32b2cbdb99b7a4de19a1e300bfcc *src/DEploid/vcf/src/txtReader.hpp
65330fa96e44f48a7b85c73750f0b108 *src/DEploid/vcf/src/variantIndex.cpp
6d4f3e64f6db7dbecaa70d26eec74aee *src/DEploid/vcf/src/variantIndex.hpp
3d782d8ef8bd87d521c4deb49c0fec45 *src/DEploid/vcf/src/vcfReader.cpp
ceaeac2eb0bbb90071ae1ea9321ed0be *src/DEploid/vcf/src/vcfReader.hpp
fd0cf88dda9eedc99b0b88dcfd05b705 *src/DEploid/vcf/src/vcfReaderDebug.cpp
140e5564ed7c0724889024f6eeee8897 *src/Makevars
140e5564ed7c0724889024f6eeee8897 *src/Makevars.win
7ae2110f56b25813379792ef4ee12a4a *src/RcppExports.cpp
5bdce6bc9d8118a937a951cfa451be5b *src/dEploidr.cpp
eda18a6f4750c6a196c852163f088c27 *src/init.c
d9780788cb9e10ae63d0cfb4ce81703d *src/r_random_generator.h
eedb9b59a5a966b63e9e82308caf7349 *src/test_exports.cpp
e095660d571c0f3ef91ce1211ecb7f76 *tests/testthat.R
90606f217a4aa820d052070a8d6405a5 *tests/testthat/test-DEploid_tools.R
2be69ac14e2d6484e57f3d67e11fbdf0 *tests/testthat/test-dEploid.R
e4f557f7810b90ff3bf1e8a6d7cf5eec *tests/testthat/test-extractCoverageFromVCF.R
31c436eba94c1e1a320c2ab829f07c45 *tests/testthat/test-r_random-generator.R
bdf6b60eb39c3b1c87a6b1d1f00163a9 *vignettes/dEploid-Arguments.Rmd
