bd80471b53fbf74a662d20dc403c2652 *DESCRIPTION
5fbc27ae5ccbb6372086e4f2e3c21a9a *NAMESPACE
0723878cbba44c68622221fc4ae292be *R/LipidMS.R
e73684936c7cb897ae2527c5c342c1ee *R/LipidMSapp.R
d9650cf839a5d006a57c3ad73e75078c *R/additionalFunctions.R
cedb622063972eba9308a94abfa3c013 *R/dataProcessing.R
cab78092e182d55c308ba8bcfad4cbc6 *R/idFunctionsNeg.R
814694884c66bb2649fc47233b148531 *R/idFunctionsPos.R
09bf100417205e1c429f698245ca671b *R/internal.R
2bcbf12f2958f6c277428cc8433bbf8a *R/internalProcessing.R
58328948d58ea87044fdf6e7d3f2067a *R/internaldbs.R
17cba91f429ad341ce8b179c8dde7751 *R/msbatchAnnotationFunctions.R
b09bc906eb9986b2dc8bd86edcd067f5 *R/subfunctionsIdentification.R
09da5e0106deed3b1f1d275251e49f8c *R/utils.R
a0d7875a2b93bbc790d359a04f47e685 *README.md
5454d8727080a4e3c26e0fae8a1364ac *build/vignette.rds
e23154e53433f94b0266d8162f67cac2 *data/CEdb.rda
b07de3672dc7d87e17e5163dbaeb2f29 *data/acylcerdb.rda
ede07584a3d0dead6de15c2b4b1cd9fc *data/adductsTable.rda
0568a959abdf387d33434ccc6b43c8ff *data/baconjdb.rda
3357df0825258895c5139b3ba42c7f36 *data/badb.rda
bec3dce4539f65e5ecd5bf9d633bc384 *data/carnitinesdb.rda
c0d73d37f15475d04acc4f4bd8077e09 *data/cerPdb.rda
8a42e991a28a8fc94d7a2fa354cf4a5e *data/cerdb.rda
df411845916523e5694b8dd055c6b184 *data/cldb.rda
02a980ea93ab29b614bda3f0d14b7264 *data/confLevels.rda
6e94e4ee8f7046c8303c6763b473a426 *data/dgdb.rda
80b01bd847602dbb3efc11aeea175c91 *data/fadb.rda
bf8146f2ab052d1b0f910ad60a3bc443 *data/fahfadb.rda
4597d64641e9a315b051d7a092264218 *data/hfadb.rda
7a5dda8189cb621b80ae6612769c6c32 *data/lysopadb.rda
8e5dc9e352d63253e77ba2e4556d3c85 *data/lysopaodb.rda
913707e665449672ee61d078883b5d92 *data/lysopcdb.rda
7f04d3955c6b54767141b012ee77a070 *data/lysopcodb.rda
681ef344bff546941f372036a059606d *data/lysopcpdb.rda
860bae46096d799b0a1c7c8043e1a63b *data/lysopedb.rda
cb189b64eeb670449358b40aa735243d *data/lysopeodb.rda
d9435ece26aaa13c3ca8d6717d52ca2d *data/lysopepdb.rda
ae4147f9ff84f08169ce2aed5aea2291 *data/lysopgdb.rda
02385c76817dfeb2aff4bbe35a59352e *data/lysopidb.rda
4d7f9e1eb585f32ebebdaa3c5b227667 *data/lysopsdb.rda
3fe5fc8899599101fb8410684834d4bb *data/mgdb.rda
e78c10e49111cb3be8b2f7a9698af92f *data/nlsphdb.rda
7beac9b39779769302fe6b0376b0e707 *data/padb.rda
d358a076cfd62b4a62c76c65f1ad6c46 *data/pcdb.rda
ceaa16e4f78b5aedbe30051452f6b907 *data/pcodb.rda
fbb3056b8d310d22174c6d5bec87f08b *data/pcpdb.rda
5341b91b113e12eb31bcd9ef83e79132 *data/pedb.rda
5f95eb23c3c5e039dab256db0a7d261a *data/peodb.rda
d7a197e538651d3b6d94ccb2e5556dcb *data/pepdb.rda
b23cf396bd5a189ada1e413e3c41cde3 *data/pgdb.rda
a64c1b1a917aa64504b88b4067269488 *data/pidb.rda
02d40d36fd8e727f70eff07de94b82fc *data/psdb.rda
6a138612320083e63866d82ef2417358 *data/smdb.rda
2a1f1a52ec91a41f60a104fb79f65877 *data/sphPdb.rda
67c9ba61966eac5987ceb1fcfda6e80d *data/sphdb.rda
d5ceb31d544b968e7cf01b91717be156 *data/tgdb.rda
60be01aafc043eb70a5c9b5f715cca3c *inst/LipidMSapp/app.R
008e1aec892ada309b7b63baa94aa686 *inst/LipidMSapp/www/iconohorizontal.png
03bdfd8e4a9ac3b490a5330e77285272 *inst/LipidMSapp/www/info_dataImport.png
c37601d38f19967e08c791b8fce5ec61 *inst/LipidMSapp/www/info_manualFilter.png
24152a13388f420a9390ba251527635e *inst/LipidMSapp/www/info_manualPrediction.png
8d8dc41812b87fa63f1792019b02c319 *inst/LipidMSapp/www/legend_manualFilter.png
518bf05df1222df021fa2c7cf5c6e06b *inst/LipidMSapp/www/legend_manualPrediction.png
6514127af2b27b7ff5b999672e2e785c *inst/doc/vignette.R
c483d602186016e2424979ce09b93fef *inst/doc/vignette.Rmd
2bac6f212bbd9ab667c12a5bf1280d84 *inst/doc/vignette.html
c8b8cdbf405637499d7d1bc3e2853c31 *man/CEdb.Rd
b0ecd88bb72b00567e4e75edadd249cf *man/LipidMSapp.Rd
11fcc6853d61479a672accfc9c38f7b5 *man/MassAcylCer.Rd
42f2a7b3ee48928e72678205fd264a35 *man/MassCE.Rd
67028995f2bb0489c7c7e45e1b951298 *man/MassCL.Rd
6a16046b21d19cc2d3c15e2baebcfca8 *man/MassCarnitines.Rd
77640b4e85e960f7b55279b8fbcb599e *man/MassCer.Rd
5b3520fa5e7159cc81b7fe93d25121fd *man/MassCerP.Rd
80891ff8c908b6dd2dca4599ea68d0f9 *man/MassDG.Rd
2c74ca9e148088280bbdc3135e549164 *man/MassFA.Rd
f8ea5431406a514b28d0508a54637cd4 *man/MassFAHFA.Rd
ee3883962b5971138de01c163cc23258 *man/MassGlcCer.Rd
7fc4f49643044d20d09daf18c250c24d *man/MassHFA.Rd
5be4c485e1e17491ab4d6704e313944f *man/MassLysoPA.Rd
98c420a3bb094b5fce35d088c473a33f *man/MassLysoPAo.Rd
3ecc0602234c65180f789f30820430dc *man/MassLysoPC.Rd
31401616b30b9d2702280d0bc370871a *man/MassLysoPCo.Rd
0e9c70d7a637aea31dcc82d8ae1f6326 *man/MassLysoPCp.Rd
a0acf9cffa415f3e5e9e94a5a13ef82c *man/MassLysoPE.Rd
478640415f1d979af48e815ea6bbe4d5 *man/MassLysoPEo.Rd
bd43fdbf846586ef074458978007ce1d *man/MassLysoPEp.Rd
99c4426c9baca2d6f7afa18ab014b065 *man/MassLysoPG.Rd
8f0dee9773a1b2ee594447f2f5826504 *man/MassLysoPI.Rd
46a8577ba9b289a29f99a87b05f19849 *man/MassLysoPS.Rd
f502d6db45849760d0d2824f2fa844be *man/MassMG.Rd
bf0e1c0d1fce134faeb44b052174b51e *man/MassPA.Rd
36334d89d10b00cd97e1889ea056b04b *man/MassPC.Rd
00bbc4c63677557b57b5718659ea5cc0 *man/MassPCo.Rd
ef0a425f7ae55089f43a57e77859c995 *man/MassPCp.Rd
1f582806e843f626d6897f446b633b67 *man/MassPE.Rd
407f881de2b5f70c474bf868d1408818 *man/MassPEo.Rd
03caa5ae02457d4b0cd09b89f75e12db *man/MassPEp.Rd
7bf2b50ad1a6aa703b2f37e8ba497ff4 *man/MassPG.Rd
f46735104449c15a65eadae6ed6951b2 *man/MassPI.Rd
131f7cb2ca1c06b110391e816b9c172d *man/MassPIP.Rd
00679fc32cbf855a89d0ec472353d13b *man/MassPIP2.Rd
07ad9d24920131fd56495707e2ad8481 *man/MassPIP3.Rd
c1b4bd3e764f0fe60e74e54c05d32cc2 *man/MassPS.Rd
0a28e639a7aaf590edf395e162327927 *man/MassSM.Rd
cd2ecf0e4184f369984fb067f8a7a805 *man/MassSph.Rd
d9d836f8bbffcda93cdae1da3326b8f7 *man/MassSphP.Rd
4da07eb0abeb9f9e35b035dcd931e353 *man/MassTG.Rd
28b9d3d827a105d9d5e04ca96bfe4310 *man/acylcerdb.Rd
a2841c506a120e908f5423f3ecc20f45 *man/adductsTable.Rd
fc05ae9f07d081e14ea91b159878195c *man/alignmsbatch.Rd
50b377740a6adb1e6611eca2ed435090 *man/annotateIsotopes.Rd
3cca5e82b81336573cc4f29cfa4d598c *man/annotatemsbatch.Rd
ef21d9ce3c4b51c3193de308fc62b466 *man/assignDB.Rd
8eb724b46db157a092df270ec9ea45cf *man/baconjdb.Rd
3943b97d5cdec0491f924b4172b74de7 *man/badb.Rd
455ca2410958a4f88e04ef1221a6c5de *man/batchdataProcessing.Rd
d4aef52985637b7e24ac3361f093fe96 *man/carnitinesdb.Rd
c0eecd23bacf352889887352d20cc17b *man/cbs.Rd
7b13ccf7ec54348869724444f129e549 *man/cerPdb.Rd
6fccae6944eebefb168cd8d6687bcb37 *man/cerdb.Rd
978e6d5077993925a5319460e72bd662 *man/chainFrags.Rd
2acf165de8372079f06f20f312344c46 *man/chains.Rd
9564ee4765ddf2e0f59af3a64c696bcc *man/checkClass.Rd
bc32d00849e60daf26604b043e5db08f *man/checkIntRules.Rd
e163b2cb639a02989726caea51032583 *man/checkIntensityRules.Rd
79aa8dffa1802981f46d24402c4365d5 *man/cldb.Rd
902036a40a3a64b4b7ecaad24cc9f38f *man/clust.Rd
806f2314ac527aa8022886f1a713cfd6 *man/clustdist.Rd
07b4215715d72d9002d68e4ff1f63310 *man/clustering.Rd
ff130f96708ccfdab9ccbc894bb5d97a *man/coelutingFrags.Rd
3a72be9304464d990795987584849e5b *man/coelutionScore.Rd
7f142995cb3e6fa9cab4b21447a2acb2 *man/combineChains.Rd
6beb90a46e2f0934e7363a8a0a1e601b *man/combineClassesAdducts.Rd
d49be739c7c76a724ea265b84e126fdb *man/confLevels.Rd
ce1094189f5fef3ad7106b81720879b7 *man/createLipidDB.Rd
04f4aa59b16c36d4907add812c45a490 *man/crossAdducts.Rd
7c0b2f9509cb45fca64db582b2e0cc45 *man/crossTables.Rd
a3b7b5c6b9e29840a35ee50f4cf7f346 *man/dataProcessing.Rd
3f94a04140b6cc6866512a568c49ba5d *man/dbFourChains.Rd
ca6029873161f52c099210bb6c115910 *man/dbOneChain.Rd
b8a3af4589a3ea8d8c019c4d055ce175 *man/dbPlasmalogens.Rd
373911686c2f0668329cb791dece979c *man/dbSphingolipids.Rd
4ee0c21fcdf9956d118567c0de04b3c1 *man/dbThreeChains.Rd
605784b2a07c8d6e77b3e81ea9b3fc7e *man/dbTwoChains.Rd
1c692281a9047f4cddcfd9d4dbb9cc39 *man/dbsAdducts.Rd
43cfba3f2b1850bef0300a7841ca2c4f *man/ddaFrags.Rd
663dba2f6ee3afe0e3077faf2ce87b23 *man/dgdb.Rd
ee2c5c86f467093117d4a9d2a9c3e4b4 *man/diffcb.Rd
52812671fe005ee9223b5db345d348d5 *man/dot-with_future_plan.Rd
0aeb070836aede4a3237073b8cbd225f *man/fadb.Rd
fa1eadf52275ae4feda1fcc7b339f463 *man/fahfadb.Rd
5af7b7832e1d8b13d5b965a935faa0dd *man/fillpeaksmsbatch.Rd
05e38f35bc7591e47494be2fb1614285 *man/filtermsms.Rd
cdb80b551b20ed092a89aacbeda05c2c *man/filtrateAdducts.Rd
c143b599a9dda2d51bf69f9bbdcc6343 *man/findCandidates.Rd
c9ee4a39c8be50a0df29b6a60ed2df46 *man/findMS2precursor.Rd
3d639ee280be8d6f758d558a81b5f5d2 *man/findPrecursor.Rd
3ca05633144de81d3ba27a9353343626 *man/frags.Rd
7842d806befbcff66e97f459afc76406 *man/getFormula.Rd
40b740da7d797f07825a1cce50b506c4 *man/getInclusionList.Rd
ae82da96c2e6ac0c2c57644249599f28 *man/getallpeaks.Rd
a98f58f2306b8b8a97b19d62933cf60b *man/getfeaturestable.Rd
b37f5a0dcaa98cdfd4e49562f1233229 *man/groupmsbatch.Rd
70d844d80be3cd528e7af2d8dfa3d79f *man/hfadb.Rd
c51d75ad6451d87c26beede27d5dc425 *man/idAcylCerneg.Rd
f949e29663fc87d4af315a8c70ad6717 *man/idAcylCerpos.Rd
d69dd2c2be87e4cd9e32a9d7028c5812 *man/idBAneg.Rd
475566f5ea98c99ac4a26f16efc47fbf *man/idCEpos.Rd
5a103d0f62f9a9d2d9ae6e6a618e7c6f *man/idCLneg.Rd
4b10c5f503c2490a38a0f8b5e2231690 *man/idCarpos.Rd
e64cc90df9eaccd9cf5446401550ae95 *man/idCerPneg.Rd
67f171aa010321b0f0825334a46888c7 *man/idCerPpos.Rd
1a5d873b4520146bd4f5ea50c3829fdf *man/idCerneg.Rd
14133fe97756fe44b5b82a6cf5ee343d *man/idCerpos.Rd
94b7a24ead349028b7774d009d41e792 *man/idDGpos.Rd
e5d432fd006f762067898641b1aae3bc *man/idFAHFAneg.Rd
69d2532bd27bb7b9c4c035c82c5bc13e *man/idFAneg.Rd
4b5ffafb93e12a2997d62207ee48d82e *man/idLPCneg.Rd
86145a8dba561b75a9e2017a6c3023b6 *man/idLPCpos.Rd
4ef8d822f803d33b5cbbd03682e62db7 *man/idLPEneg.Rd
3dc27a130db8896b3c0878227df6892d *man/idLPEpos.Rd
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2c2e5884b5573dff5061fe63f727a7ba *man/idLPIneg.Rd
6377d651150866ae74837f80a55d10db *man/idLPSneg.Rd
2071fa4e1437539de7d70695c5b315bd *man/idMGpos.Rd
08132dd646a0c717791b99dc19f61a09 *man/idNEG.Rd
f0c29c59abf603a9c305bca05af7a7e4 *man/idPCneg.Rd
6e9f068e618dc6d93c9ebc7d651cee5d *man/idPConeg.Rd
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0f312a9c278123e55fcfdf19f95bf3ed *man/idPCpneg.Rd
9e029e9ae2c4235f8b991eb32f7a3c46 *man/idPCpos.Rd
35f2f2c0b4073f8ef081371646a26ca8 *man/idPCppos.Rd
60a6332b40044e9b216a5ae1c0b3c940 *man/idPEneg.Rd
a4e1711908d4f4328a3e2c1795fc3f62 *man/idPEoneg.Rd
999caa32fa33192f5f89ffba12dc5687 *man/idPEopos.Rd
35aba211bd0dbe87e02221d4cad71d5b *man/idPEpneg.Rd
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8a456642f9cdc863cbfc9f0a19001d99 *man/idPEppos.Rd
5c1c2a4b8172a76385f4e069e61ebce0 *man/idPGneg.Rd
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21f7ae722a1755874c9a3d00cf2fef52 *man/idPIneg.Rd
76caef51d033f67a76f59ed671ccc510 *man/idPIpos.Rd
90a1630a632164a6a3cd43853cdf5f0b *man/idPOS.Rd
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90adc7d934f86b7d37dc7910804d2bf0 *man/idSMneg.Rd
41938e72fbde998873ecb303e170a72d *man/idSMpos.Rd
73e28820fb3f25a793b768a354c1539a *man/idSphPneg.Rd
e5a064ac818d10eed0a78c5063ccfc4f *man/idSphPpos.Rd
0322ca7fdedc6206e570edb5a6eb5ac3 *man/idSphneg.Rd
e893a4b04013c699ba653a47644efbd4 *man/idSphpos.Rd
1b0b828d8067333c109f7497cadd3dab *man/idTGpos.Rd
4c95dbaad92f3516b8b2c70dbd215123 *man/indexrtpart.Rd
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562ecba72252cd23545e9c48b26a4bad *man/joinfrags.Rd
e9d2484fc053abfcefa342c26daba50a *man/lysopadb.Rd
8ee2451980aaffb9910179babcd312d3 *man/lysopaodb.Rd
694f895422f9f0a93e6ccf72119ab17a *man/lysopcdb.Rd
676e849f8ffaf7a3bd8398144680af05 *man/lysopcodb.Rd
0b45030917dd5ebb132be9663f67b128 *man/lysopcpdb.Rd
cea7d15277dcc5cd4163bfb3646ed9b5 *man/lysopedb.Rd
7a2014c202e4544a7ec6139d322208c1 *man/lysopeodb.Rd
8e7625a0bbbb35d0e9a503f880ebd820 *man/lysopepdb.Rd
4f023cf01f281e2b8a15268020429dbf *man/lysopgdb.Rd
7510f749281b8f4d85974f637fedef01 *man/lysopidb.Rd
2e1f1c1bd3ef61d75ad32ddfd4c9de1b *man/lysopsdb.Rd
1b481a9563d05fe6ad51baa603a7f256 *man/mgdb.Rd
1a24c70774c8f6e3ed8662484d7562b1 *man/mzMatch.Rd
8294f24d538fa80ca97cdb5322bf243b *man/nlsphdb.Rd
513a5d260fe285fb0ba14022ecd0c297 *man/organizeResults.Rd
85ee63fea612445d04a50a86f0eb71dc *man/padb.Rd
bb7d1f2d21560b76f63a83a2453f3d73 *man/partitioning.Rd
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3ba44e782a8e9cff9e487a95131f55db *man/pcpdb.Rd
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ec74213fd87efed81341b5a41095d056 *man/pepdb.Rd
d48a5362a7903ac9dcf74318947cf22b *man/pgdb.Rd
27e5ff3c2d00008463da4a6915d673b3 *man/pidb.Rd
ecdcb6072e8187045ece044e44d62a64 *man/plotLipids.Rd
00bc58eb965867aecb89d03c3e3ce1b9 *man/ploteicmsbatch.Rd
6a2060bc25b6ff1cd46239d8ca2f6795 *man/plotticmsbatch.Rd
a35c1592f49f8ef6c544b082d794cdd4 *man/psdb.Rd
f46bd9b926c61792545242b62c7d4a61 *man/readFileLipidClasses.Rd
cfbb720d9903cba53bccfd466d7aa460 *man/readMSfile.Rd
03655f2c2e268c28a25ad2ed847f5e51 *man/removeduplicatedpeaks.Rd
221f57e7099e1482c42376b32d82ca5d *man/rtcorrection.Rd
da33a0ea2c69d40d45087d046774b48f *man/rtdevplot.Rd
089984a5e6e9a5c8de85ab8b300a1f83 *man/searchIsotopes.Rd
b45c6659eeaf3942512909ef43ca4272 *man/searchIsotopesmsbatch.Rd
594f5ebf6acc1530946e43895852c524 *man/select.Rd
387080b70933790a71cbedd90710a6b1 *man/setmsbatch.Rd
1d6063fe720d981b91fe8de70cbb107f *man/smdb.Rd
1b22497e3749cfd63df21f610d5319a7 *man/sphPdb.Rd
f9bfe6e21807552ef4f4562bf2e8d2a8 *man/sphdb.Rd
cec3bfa916e8eb81202470a9e22c07c8 *man/sumChains.Rd
d1aa2c343107df77f830169f8d1de6d8 *man/tgdb.Rd
1bdc7c8929d3d9040be98d3d12a1b046 *src/Peakpicking.cpp
b76426f5d0122c1ffd09fc4239d01a20 *src/auxPeakPicking.h
fa2916bd6fd5f7e0964c0b6ef203449a *src/clustdist.cpp
11fc9d76c9c66acbaa3051a653c718b3 *src/init.c
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c483d602186016e2424979ce09b93fef *vignettes/vignette.Rmd
6a07fdc11dc92cf2b34cbbbc99e33faf *vignettes/workflow.png
