d504043581610bea1d8c830d5ac84649 *DESCRIPTION
69b290e0ffa5b267f821e006ecc99608 *LICENSE
d6320700aaf8d2c62bec4effea7911c2 *NAMESPACE
81fa55f66a41e3badc173a0caf9d8582 *NEWS.md
686c1242abea42ec46435a876e1d963b *R/Class-Colony.R
3cfc8d35fa58fc9f5e6c525c42dfd147 *R/Class-MultiColony.R
8824374844a7f2b757d7ba2ff8ba50f8 *R/Class-SimParamBee.R
620b418d69fbfb0957b307273d796461 *R/Functions_L0_auxilary.R
25412807f35dc2e99370a2c3dfe05f0d *R/Functions_L1_Pop.R
eea4927f2e081988490213c05612c947 *R/Functions_L2_Colony.R
8dc369005b82ff934a620d6d0f29763e *R/Functions_L3_Colonies.R
349ba016fff19dd6df2cfcc724796cf9 *R/RcppExports.R
a3a064ecf060dcf89ad4f41c710fcc17 *R/SIMplyBee.R
448c672cf3af604902d97a1da81c1415 *README.md
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
2a6d6120d6778b4a839b594ff175bd10 *build/vignette.rds
1792bc1f61ecf953427304ab33faf4a9 *inst/CITATION
05ba4067d83a7a0b5690a05310e87402 *inst/doc/A_Honeybee_biology.R
58e3afe925c0ca0643026f54059afc13 *inst/doc/A_Honeybee_biology.Rmd
474f531b54997b2f8d4ad2e0e99a42c9 *inst/doc/A_Honeybee_biology.html
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510264d6bab07d10eaebd46b9c1fe15c *inst/doc/B_Multiple_colonies.Rmd
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21a083e95af0c92c8db7c21f0731182d *inst/doc/E_Genomics.R
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a4fc59e9cd1c17a3d2e32efd2711a1ca *inst/doc/E_Genomics.html
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650a2cc3c7ed683793d3c1fac9f2219e *inst/doc/F_Quantitative_Genetics.Rmd
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9485f4ba68769a463e2e508ee7f9f31f *inst/doc/G_Sampling_functions.R
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4ee93b768b2cffee8e283fdcd23890ff *inst/doc/Z_FAQ.R
fd4034fc540c5962647802409f3d5569 *inst/doc/Z_FAQ.Rmd
466849c80cb6cbd41fb2890ce56862b8 *inst/doc/Z_FAQ.html
082cc3555d66dad9b21979fd537d5766 *man/Colony-class.Rd
1860637e5847e766efd111ef1af3bd0d *man/MultiColony-class.Rd
48ef5b3e3562d481847ab3a6c1f7c3d9 *man/SIMplyBee-package.Rd
272e64a1a62a1c53c088f24157796580 *man/SimParamBee.Rd
de5b7d41ef9561f3280f3c09be4ab853 *man/addCastePop.Rd
62f7ddf494d22ca1e554ad8a738ed16c *man/buildUp.Rd
e801ab54757895b7ee73ca2e64588bd3 *man/calcBeeGRMIbd.Rd
97505c1b3e2fca6a67acdb51c0f1955f *man/calcBeeGRMIbs.Rd
8026f49c4c3b9cb38a0240a055062ceb *man/calcColonyValue.Rd
74b290ac30d28e323762c0ebca0c456f *man/calcInheritanceCriterion.Rd
0848dab33ddf6963af0d790e4b3369ad *man/calcPerformanceCriterion.Rd
5c542ab3d0a70da8dd5f06da9c100118 *man/calcQueensPHomBrood.Rd
71444a383e03d978ee71b401fc744cb5 *man/calcSelectionCriterion.Rd
6e14def6e72a23960fafb54f2cd95a47 *man/collapse.Rd
cdf30af354f680d907d88d2b894033ca *man/combine.Rd
f2a0f75d8c75f4d4a9506d7828f52b23 *man/combineBeeGametes.Rd
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695f56ad5c57a2500fda3ae08d437aac *man/createColony.Rd
dd269f3477bf98ad90a740b3a5fdd15f *man/createCrossPlan.Rd
1a32457023a13a896d1b8bef27277fee *man/createDCA.Rd
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6d933359f79a69c6c34e0debd62eba95 *man/createMultiColony.Rd
1a8d48077ee1eb4b14f5c8f0c80d8827 *man/cross.Rd
2c4ad39f2fbbf0d16918684e96b7454c *man/downsize.Rd
3ce31928ace551438f5877087944d783 *man/downsizePFun.Rd
4bd76bffaf52df90a3e8284689c1c830 *man/editCsdLocus.Rd
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15c943a543f9a5d2b139714a82171f0f *man/getAa.Rd
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6674116324f16f2e5b33612741e991dc *man/getCaste.Rd
2cb48be985924a99f895deedb5abb5ba *man/getCasteId.Rd
927426c419d6a99f92fedd75a40afdb7 *man/getCastePop.Rd
52ccdb9ea4ba5a3d810fda0215734b61 *man/getCasteSex.Rd
92848566631da5eb58d4bb8705dd5315 *man/getCsdAlleles.Rd
0b484235f05f231aaf3b9f2f5a03d483 *man/getCsdGeno.Rd
0131ec8f7a9dea87cb1fb0e15577c213 *man/getDd.Rd
762f462aa7348bb5b443cf2b0980eb0a *man/getEvents.Rd
d0f2b161275dc36db6f6a9e3d75d4884 *man/getGv.Rd
93d4623ff48dcd14aaea4adb99cb1986 *man/getIbdHaplo.Rd
9d16b45e49c4f0046484fee90055766e *man/getId.Rd
7433895f8bd6956b5e2c0ed1cf79bc6f *man/getLocation.Rd
6bd1cb8526b069437e2c17d3912c18b6 *man/getMisc.Rd
2764d994a06b2635c2865ed37f17007c *man/getPheno.Rd
8729e9f8bb8dde972d73e2751344c7d5 *man/getPooledGeno.Rd
e7f71d084feceed33a81995e23156302 *man/getQtlGeno.Rd
b3875e39a3756c5e8f150b23d5a7cb00 *man/getQtlHaplo.Rd
c8cbbba95edabd115ce34c2cffec547e *man/getQueenAge.Rd
313b9bbd258de9f22d84be18032f7f1b *man/getQueenYearOfBirth.Rd
6a45260e48923fe26da71770a6b426db *man/getSegSiteGeno.Rd
854b9e5eaac5c9ee75f0b25b7c9c6416 *man/getSegSiteHaplo.Rd
362454fff068e3b55b61fd28302b092b *man/getSnpGeno.Rd
f1d6f4836a64f5553246e3c7def66695 *man/getSnpHaplo.Rd
e00036ad32a7b4b3c8274b50db1904d3 *man/hasCollapsed.Rd
42a9dc1e03d6926abc5c39f723fba4dd *man/hasSplit.Rd
72262b1fb78cd24287609cc58463f73a *man/hasSuperseded.Rd
6477e90479ab2450b9aa77f5c64511fd *man/hasSwarmed.Rd
46ca724c38584b87207646e94107575b *man/isCaste.Rd
64dfb9ba85554f09de02b5c89b57e36c *man/isCsdActive.Rd
cac72b41cb590d8d06fd44d5061d1302 *man/isCsdHeterozygous.Rd
260da26657056aefc058865378b43f94 *man/isDronesPresent.Rd
f55017780e31d92ad40974925d306d5c *man/isEmpty.Rd
4c65bb150cc53cfd9dc3cee895eb0ab6 *man/isFathersPresent.Rd
67af67b159d3d59e13e2b1cf405e85df *man/isGenoHeterozygous.Rd
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a45ab268bde141c1759e7023103a8fb4 *man/isProductive.Rd
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1b84f1d521c0db03257edaadd2670cc7 *man/isSimParamBee.Rd
3d97f9bd90a9704d169253a128069780 *man/isVirginQueensPresent.Rd
fd7fe3b310b1ccd3943f3b0e733e9ac2 *man/isWorkersPresent.Rd
4abee9b04a70ac4f596b31e9147bcc1b *man/mapCasteToColonyValue.Rd
c0ac1fe9db7e6166209600277c566d42 *man/mapLoci.Rd
e4cc1aa6b5e98cac5cd1e53e434c7c34 *man/nCaste.Rd
0135c3b8e779330cb8404b7ce5b3cb0d *man/nColonies.Rd
7c5eed4be990187e0f3b5a855e46a98b *man/nCsdAlleles.Rd
a6a3e838af1e16f3096bb25829685924 *man/nDronesFun.Rd
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bd3eecfe9a68f81e80edf67758557c30 *man/nVirginQueensFun.Rd
31b1c05ee79f99c6ebc01a095c3ef368 *man/nWorkersFun.Rd
5d9e1253fb1c92fcb1f25d5aa8c3f8a9 *man/pullCastePop.Rd
fb5402375e80b6f77023a6e1448df93e *man/pullColonies.Rd
5c394864022ec3ecfc57dd0db844a146 *man/pullDroneGroupsFromDCA.Rd
b6535752587e3bc05c9b7909e5aad9eb *man/pullInd.Rd
fd13894bed2e35c1dd7d217f16804d97 *man/rcircle.Rd
c6ed8e1aa33e4e6fdef8cd9298152517 *man/reQueen.Rd
415234d933b89250c68a2e4363483472 *man/reduceDroneGeno.Rd
3aa6ad82ac6e0ec2834e621f9e39810f *man/reduceDroneHaplo.Rd
7e2880a7ae38cbe8e86557f8835a9033 *man/removeCastePop.Rd
4dcdc345f34b550b14ad488d4bd50204 *man/removeColonies.Rd
4de6d2eb1d678e1d3f3e777752abf56f *man/replaceCastePop.Rd
5ce76878c1336c4650d76716474ac3ae *man/resetEvents.Rd
6484134b023eeed933f6eec2baff923e *man/selectColonies.Rd
8bfb915dde82e21a33908c9bca89bffa *man/setLocation.Rd
ec910b9cdeaafbb7d77764defe315af6 *man/setMisc.Rd
52971f380a4342f5d231e008a1c496d4 *man/setQueensYearOfBirth.Rd
8b7211dd9a61c2bb0726e77fbd939be9 *man/simulateHoneyBeeGenomes.Rd
e3f5b2ea90a090ebcf915701e41ae983 *man/split.Rd
37468d094585eec84e99f07743a366c4 *man/splitPFun.Rd
bf986e141fd2c25bfff2a7b3baf65b92 *man/supersede.Rd
1ebd0cb808aed2da2f10edd1fc419141 *man/swarm.Rd
78cb50b34e746208acee9fb91be9c7de *man/swarmPFun.Rd
efae3959806667aa05f2d1ec183b1270 *src/Makevars
7bc04c0e8a987f0584b063c424eeecc5 *src/RcppExports.cpp
884d48351049e0059c7ddbdcea39f6f0 *src/isHeterozygous.cpp
c667f22089839317986819d931154031 *src/isHeterozygous.h
838dbba4d6c7e265bb95ba8061c847d0 *src/simplybee.h
378e4ea6d6997cb1970218d60a706dd0 *tests/README.rd
98fcc9f864888b8dd8cb72a81ac11ee6 *tests/testthat.R
2ae37afa598557a243c30b11b9f9c3aa *tests/testthat/test-L0_auxiliary_functions.R
44e1008bbc8c5cd03dcfc411cc7ab3aa *tests/testthat/test-L1_pop_functions.R
ea8bdf88b3e0189a776946a99c899f59 *tests/testthat/test-L2_colony_functions.R
e3e277b8e84aa1986bd2c84aef0608e2 *tests/testthat/test-L3_Colonies_functions.R
58e3afe925c0ca0643026f54059afc13 *vignettes/A_Honeybee_biology.Rmd
510264d6bab07d10eaebd46b9c1fe15c *vignettes/B_Multiple_colonies.Rmd
264540e772047cffd40f142a41f89327 *vignettes/C_Colony_events.Rmd
0165388a15daa7e7bcd7ddac807a3112 *vignettes/Colony_locations.csv
6e7a5f64a30c8e6904ca3be70ab70180 *vignettes/D_Crossing.Rmd
b0219975e15cb682a309dd43e07d94ad *vignettes/E_Genomics.Rmd
650a2cc3c7ed683793d3c1fac9f2219e *vignettes/F_Quantitative_Genetics.Rmd
b11f234830f8462cdfe366821992c20f *vignettes/G_Sampling_functions.Rmd
fd4034fc540c5962647802409f3d5569 *vignettes/Z_FAQ.Rmd
d2a223b0ad8c5c06341c4dd6449e1934 *vignettes/collapse.pdf
2e7e98330f4b76413fa6eb4792f0d88d *vignettes/collapse.png
53b354430b9d9bc5b8f79c4bfc65088c *vignettes/decisionTreeCrossing.png
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9fcd533c27130a2e7c625a324bcd9bf0 *vignettes/split.pdf
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feafe7c630fbec73a44d6c0232200c15 *vignettes/swarm.pdf
5fe8734f0d0171737e4bd9450c89710e *vignettes/swarm.png
