c0a8add9fe2e8cb6e14e65a545ee54ea *DESCRIPTION
49e18f741a2ff2d20ea617fb69603663 *NAMESPACE
57c40833d274b31fac5e7c04aca87f4b *NEWS.md
197b68ea7081848a8601e3c2b5fb4ab2 *R/cauphylm.R
1025cf9b83044e8a699c4be9639de974 *R/data.R
1b5ec7f9f66e3c15ca7fd3fe34e02346 *R/densities.R
f59429c29adcad794440ab29f5021c7b *R/fitCauchy.R
8b3245298c682cba1bfbddbf08cb0677 *R/optimization.R
725b8c561c4bccd33a59df8b760402b7 *R/plot_asr.R
3eb693a6a84b81861be603aea1bb31ef *R/rTraitCauchy.R
e98bbe27950f3f84fb5e7804e3705431 *R/utils.R
cd3ff6e1c3a8cca8f5b048f1836af7aa *README.md
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
2ddc2eac8226ec8ce05ce72b42521b55 *build/vignette.rds
2b822513c1ffa9634d9b97955a3919e1 *data/lizards.rda
44acd1b219d2d20f4db961def84d5121 *inst/CITATION
fe06e71debddc41a5558ab66d75659fb *inst/WORDLIST
be7b5298902a83701391ada50f47734f *inst/doc/lizards.R
2a0c3eef2a9373155fca8cd16438e993 *inst/doc/lizards.Rmd
e93f2a5c8f227424411924ab0bc70adf *inst/doc/lizards.html
3ece5716a2c213453ef6b2ffbddbb0b5 *man/ancestral.Rd
ab33cfc2801cb01c23ac31e1473a5dc4 *man/cauphylm.Rd
ab71441913b844e3c398a7974d148e29 *man/checkDuplicates.Rd
866498300bfaef00445716bcb50a3477 *man/checkTraitTree.Rd
2abc4e42c0a591af696727136f650fae *man/check_tree.Rd
b455d91ea5b1572874bb88d59be739bb *man/compute_vcov.Rd
8163159fbbdbd5e79414038d6390e465 *man/do_optim.Rd
7d954972e74232bef2bf79ac15394984 *man/find_modes.Rd
dc674b2c36887521c67306b07ed88754 *man/fitCauchy.Rd
4dbcf8b16b63981cede79174c09cc54a *man/fitCauchy.internal.Rd
04e59b4d8533ec0b3d553a0983012c9d *man/fit_function.Rd
e9fb7bc10630c842550530c830abb74f *man/getBounds.Rd
fc9ef56d09038bfacf33ac2ef243f22e *man/getBoundsCauchy.Rd
2f890970f5f2f9c607a69565a2522d6b *man/getBoundsLambda.Rd
97ac26f04fd6ae4e69482636af10a329 *man/getParamNames.Rd
e590b67491e1b0a5414bb9f2d4f5a4f8 *man/getStartingValues.Rd
9a37c468fc0c92ee460640ea41ae901a *man/getStartingValuesCauchy.Rd
974128bfaeb9e52602305dd0f08b32c1 *man/getStartingValuesLambda.Rd
90cefbdb1d9f099e1a2c2bd457b36929 *man/hdi.ancestralCauchy.Rd
047bad19ecda992b27c3c96f5b44df3c *man/increment.Rd
1eca9238bf843644d050321c5c6d2a75 *man/initDispersionParameter.Rd
0e6f2bd7c88bc28c772c2dd9253e6f2a *man/initLambdaParameter.Rd
49c929ded64d18fd23649f42f5bddf95 *man/initPositionParameter.Rd
0677801d4104a444d5d73535158cfd45 *man/lizards.Rd
3af58ff9aefdfada1fc5bc4f66bc3187 *man/logDensityTipsCauchy.Rd
34b7a060b2aaa4cd960960bf444f4d8c *man/maxLambda.Rd
6333da96fc773c456a0a1c0e4228afc1 *man/minusLikelihoodFixedRoot.Rd
f52c93b96ce0d0cabfa64355b3214e44 *man/minusLikelihoodFixedRoot_lm.Rd
88190db92d494d6cf52a8ef70de98f3c *man/minusLikelihoodFixedRoot_mu.Rd
c700de4ccfc8f25f6efb0aa6f0c7057a *man/minusLikelihoodREML.Rd
e13377a874fe1bd219d93991bb360a32 *man/minusLikelihoodRandomRoot.Rd
402f934603372bba406c1e7656f71651 *man/plot.ancestralCauchy.Rd
f278fa5eb657560ee5c58b405c1bf33f *man/plot.invisible.Rd
b5f954273421161a9bbda44313f3a69d *man/plot.profile.cauphyfit.Rd
526eb5e704a2483f28d1ab47efd08d24 *man/plot_asr.Rd
d58e12d3f38ca6737b315b0c8132e9dc *man/posteriorDensityAncestral.Rd
65b4e89c04b0cbdc6503aa89530db1f9 *man/posteriorDensityIncrement.Rd
9664627315cf9cfc4da317fd0f99c134 *man/printRTreeTest.Rd
a82b1e974e6fe3fe98e7d9844ae14328 *man/profile.cauphyfit.Rd
7695e4f367036a826b742c8fc4b79b56 *man/rTraitCauchy.Rd
4fb0af27441052862293138abdaa5270 *man/reroottip.Rd
77211e57e07e0aa6f363024748a912ed *man/safe_get.Rd
7040e1f8708528f08557db543181315a *man/simulateTipsCauchy.Rd
fbf38c3c34bf6a7d0eb65eed6aceedba *man/transformBranchLengths.Rd
ab0bcd71106c4f2386d7644603f1d1bc *man/vcov.cauphyfit.Rd
895df9dd4c65d3f045baebebdf9d0e64 *man/vcov.cauphylm.Rd
80102f438bce39260dc262e7fd4a5e91 *src/Cauchy.c
2e8cfa0cd917e123a9dbaabc918c9196 *src/Cauchy.h
528e83d33a084aa3f975f0bc1856d92a *src/Cauchy_R.c
a2e6e7685e5585cbe79270c86061b065 *src/ComplexLog.c
428120dd908232a83b6a5ce057a7939a *src/ComplexLog.h
7f62ac30ed96fe38171a00512b50399b *src/Kahan.c
a5c71061705a565b077b1a7e8c10c1e6 *src/Kahan.h
488793af1b081ccc0552d324f63f627d *src/Makevars
46674c684961694a4675edfe0f7d0fba *src/SimulateTrait.c
cf08340685c0be4e702873cbd754f5c7 *src/SimulateTrait.h
74a758c3a7c0bf2cccdf3e0ea5b6291f *src/Tree.c
4bd955be110182dd5b690bdec4672aae *src/Tree.h
34e3843a9134c9ec6c4daf495b06d988 *src/Utils.c
1bfe020356228cc0116c838bc5b88dd6 *src/Utils.h
0aa107372d9f3192a9b0533d64cb522f *src/init.c
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
5890e436018ae08379b62fdd33397e0b *tests/testthat.R
c78cd8edd8d0b0f09b5dfecd57c4f3ab *tests/testthat/testAncestralStateReconstruction.R
44e1d4acedd3ba8faf5d749a919d78bf *tests/testthat/testCauchyLikelihood.R
cd5fb72e57c6c39ccb3425259c00a22f *tests/testthat/testCauchyREML.R
78ce3e106644c059fdda9f650aea9a3d *tests/testthat/testFitFunctions.R
c00f058604e20adb48f1ad2a92ff4935 *tests/testthat/testIncrementReconstruction.R
0f4cda40ea28026aeacb6812d072fbbe *tests/testthat/testInit.R
f377b19342049e8c54e5a399937d1ffb *tests/testthat/testReRoot.R
c9b482dafb65a3365a527620e9b1b915 *tests/testthat/testSimulation.R
2a0c3eef2a9373155fca8cd16438e993 *vignettes/lizards.Rmd
