Last updated on 2025-12-30 10:51:17 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.4 | 25.27 | 334.12 | 359.39 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.4 | 18.37 | 204.95 | 223.32 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.4 | 59.00 | 456.52 | 515.52 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.4 | 28.00 | 266.53 | 294.53 | ERROR | |
| r-devel-windows-x86_64 | 0.2.4 | 34.00 | 388.00 | 422.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.4 | 28.17 | 260.51 | 288.68 | ERROR | |
| r-release-linux-x86_64 | 0.2.4 | 23.39 | 259.41 | 282.80 | ERROR | |
| r-release-macos-arm64 | 0.2.4 | OK | ||||
| r-release-macos-x86_64 | 0.2.4 | 17.00 | 423.00 | 440.00 | OK | |
| r-release-windows-x86_64 | 0.2.4 | 34.00 | 384.00 | 418.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.4 | 20.00 | 377.00 | 397.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.4 | 38.00 | 550.00 | 588.00 | ERROR |
Version: 0.2.4
Check: DESCRIPTION meta-information
Result: NOTE
Author field differs from that derived from Authors@R
Author: ‘Naeem Khoshnevis [aut] (<https://orcid.org/0000-0003-4315-1426>, HUIT), Boyu Ren [aut, cre] (<https://orcid.org/0000-0002-5300-1184>, McLean Hospital), Tanujit Dey [ctb] (<https://orcid.org/0000-0001-5559-211X>, HMS), Danielle Braun [aut] (<https://orcid.org/0000-0002-5177-8598>, HSPH)’
Authors@R: ‘Naeem Khoshnevis [aut] (ORCID: <https://orcid.org/0000-0003-4315-1426>, AFFILIATION: HUIT), Boyu Ren [aut, cre] (ORCID: <https://orcid.org/0000-0002-5300-1184>, AFFILIATION: McLean Hospital), Tanujit Dey [ctb] (ORCID: <https://orcid.org/0000-0001-5559-211X>, AFFILIATION: HMS), Danielle Braun [aut] (ORCID: <https://orcid.org/0000-0002-5177-8598>, AFFILIATION: HSPH)’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [128s/134s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-25 17:37:30.81575 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-25 17:37:35.348998 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-25 17:37:39.136248 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-25 17:37:47.305633 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:37:51.225448 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:37:55.018407 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1105294 on localhost:11994 at 17:37:55.353
2025-12-25 17:37:59.42045 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.402 s.
2025-12-25 17:37:59.46593 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:03.149663 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:06.744652 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-25 17:38:10.925557 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:14.636906 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:18.48831 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:21.008209 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:21.050573 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:24.689993 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:24.709002 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:24.730425 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:24.76524 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:24.804397 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:24.845599 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:24.885033 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:25.037045 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:28.647655 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
starting worker pid=1112947 on localhost:11994 at 17:38:29.093
starting worker pid=1112946 on localhost:11994 at 17:38:29.124
2025-12-25 17:38:37.866322 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:38:42.285972 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:42.299581 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-25 17:38:42.308606 gimli2 1097491 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1116805 on localhost:11994 at 17:38:42.829
2025-12-25 17:38:47.277465 gimli2 1097491 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.96300000000001 s.} ...
2025-12-25 17:38:47.280491 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1118157 on localhost:11994 at 17:38:47.723
2025-12-25 17:38:51.522121 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.242 s.
2025-12-25 17:38:51.52898 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1119207 on localhost:11994 at 17:38:51.957
2025-12-25 17:38:58.013857 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.48899999999999 s.
2025-12-25 17:38:58.016311 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 15.717 s.
2025-12-25 17:38:58.026569 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:58.03619 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-25 17:38:58.074757 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:58.087438 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-25 17:38:58.16663 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:38:58.17647 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-25 17:38:58.203394 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:39:00.527213 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:39:00.541071 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-25 17:39:00.568949 gimli2 1097491 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-24 r89227), detected cores: 32
2025-12-25 17:39:00.581659 gimli2 1097491 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-25 17:39:00.617618 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-25 17:39:04.542085 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:39:08.104996 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1123457 on localhost:11994 at 17:39:08.488
2025-12-25 17:39:12.66418 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.559 s.
2025-12-25 17:39:12.666591 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1124807 on localhost:11994 at 17:39:13.014
2025-12-25 17:39:17.290832 gimli2 1097491 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.624 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-25 17:39:17.354932 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:39:19.672784 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:39:23.535813 gimli2 1097491 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1127817 on localhost:11994 at 17:39:23.972
2025-12-25 17:39:27.645303 gimli2 1097491 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.10899999999999 s.
2025-12-25 17:39:27.706303 gimli2 1097491 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-25 17:39:31.727827 gimli2 1097491 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1130628 on localhost:11994 at 17:39:32.132
2025-12-25 17:39:38.391339 gimli2 1097491 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.66200000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [70s/100s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-29 13:23:09.821448 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-29 13:23:13.756898 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-29 13:23:17.325604 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-29 13:23:23.335972 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:26.548952 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:30.385463 gimli1 1722069 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1736514 on localhost:11112 at 13:23:30.706
2025-12-29 13:23:33.15023 gimli1 1722069 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.765 s.
2025-12-29 13:23:33.187103 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:36.03705 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:39.238545 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-29 13:23:42.538382 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:45.941291 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:48.009316 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:50.208912 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:50.242965 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:53.417752 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.448743 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.477667 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.510965 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.54766 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.582003 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.617625 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:23:53.660289 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:23:57.026581 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
starting worker pid=1757784 on localhost:11112 at 13:23:57.378
starting worker pid=1757785 on localhost:11112 at 13:23:57.481
2025-12-29 13:24:03.138606 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:24:06.265816 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:24:06.285331 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 13:24:06.292539 gimli1 1722069 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1766565 on localhost:11112 at 13:24:06.705
2025-12-29 13:24:10.270199 gimli1 1722069 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.976 s.} ...
2025-12-29 13:24:10.272239 gimli1 1722069 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1770024 on localhost:11112 at 13:24:10.559
2025-12-29 13:24:12.941811 gimli1 1722069 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.669 s.
2025-12-29 13:24:12.951933 gimli1 1722069 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1772722 on localhost:11112 at 13:24:13.266
2025-12-29 13:24:16.164355 gimli1 1722069 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.21299999999999 s.
2025-12-29 13:24:16.166169 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.88099999999999 s.
2025-12-29 13:24:16.170962 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:24:16.182155 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 13:24:16.193052 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:24:16.202141 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 13:24:16.250353 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:24:16.266021 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 13:24:16.287604 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:24:18.374979 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:24:18.38994 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 13:24:18.400933 gimli1 1722069 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R Under development (unstable) (2025-12-28 r89254), detected cores: 64
2025-12-29 13:24:18.409005 gimli1 1722069 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 13:24:18.425155 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-29 13:24:21.597116 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:24:24.966622 gimli1 1722069 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1784237 on localhost:11112 at 13:24:25.287
2025-12-29 13:24:27.610822 gimli1 1722069 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.64399999999999 s.
2025-12-29 13:24:27.612786 gimli1 1722069 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1786300 on localhost:11112 at 13:24:27.953
2025-12-29 13:24:30.748042 gimli1 1722069 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.13499999999999 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-29 13:24:30.787903 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:24:33.491572 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:24:36.45698 gimli1 1722069 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1792600 on localhost:11112 at 13:24:36.793
2025-12-29 13:24:39.262384 gimli1 1722069 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.806 s.
2025-12-29 13:24:39.295335 gimli1 1722069 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 13:24:42.479157 gimli1 1722069 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1796676 on localhost:11112 at 13:24:42.798
2025-12-29 13:24:46.541201 gimli1 1722069 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.06100000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [145s/444s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-26 22:49:08.4103 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-26 22:49:24.530401 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-26 22:49:36.110408 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-26 22:50:02.79345 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:50:13.784366 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:50:28.8768 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=627396 on localhost:11507 at 22:50:29.471
2025-12-26 22:50:42.152785 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 13.276 s.
2025-12-26 22:50:42.419077 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:50:55.679208 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:51:07.701552 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-26 22:51:19.569707 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:51:32.756306 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:51:44.448699 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:51:52.77544 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:51:52.858649 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:52:08.270106 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.316254 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.35639 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.396866 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.467737 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.497675 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.565941 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:52:08.646268 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:52:23.496615 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
starting worker pid=634692 on localhost:11507 at 22:52:24.242
starting worker pid=634693 on localhost:11507 at 22:52:24.504
2025-12-26 22:52:53.845146 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:53:06.752936 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:06.782396 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:06.811966 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=636813 on localhost:11507 at 22:53:07.285
2025-12-26 22:53:21.398103 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 14.574 s.} ...
2025-12-26 22:53:21.406602 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=637217 on localhost:11507 at 22:53:22.280
2025-12-26 22:53:37.428914 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 16.022 s.
2025-12-26 22:53:37.437695 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=637846 on localhost:11507 at 22:53:38.437
2025-12-26 22:53:57.123574 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 19.686 s.
2025-12-26 22:53:57.131742 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 50.349 s.
2025-12-26 22:53:57.153689 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:57.198775 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:57.281587 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:57.322799 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:57.656408 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:53:57.698889 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:53:57.784009 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:54:06.698689 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:54:06.728137 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:54:06.801253 gannet.stats.ox.ac.uk 622140 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 22:54:06.836365 gannet.stats.ox.ac.uk 622140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 22:54:07.032869 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-26 22:54:16.907442 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:54:33.277739 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=639666 on localhost:11507 at 22:54:34.444
2025-12-26 22:54:47.260752 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 13.9829999999999 s.
2025-12-26 22:54:47.276225 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=639896 on localhost:11507 at 22:54:48.609
2025-12-26 22:55:04.743584 gannet.stats.ox.ac.uk 622140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 17.467 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-26 22:55:05.118037 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:55:16.083339 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:55:33.816705 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=641447 on localhost:11507 at 22:55:35.264
2025-12-26 22:55:46.365098 gannet.stats.ox.ac.uk 622140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 12.548 s.
2025-12-26 22:55:46.506912 gannet.stats.ox.ac.uk 622140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 22:55:57.147409 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=642520 on localhost:11507 at 22:55:58.115
2025-12-26 22:56:13.640608 gannet.stats.ox.ac.uk 622140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 16.49 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [81s/120s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-26 21:33:55.840385 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-26 21:34:00.052228 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-26 21:34:03.902132 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-26 21:34:10.884909 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:14.564908 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:18.318578 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=352362 on localhost:11272 at 21:34:18.559
2025-12-26 21:34:21.898304 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.58 s.
2025-12-26 21:34:21.977029 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:25.689109 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:29.421248 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-26 21:34:33.276237 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:36.881544 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:39.945741 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:42.519772 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:42.572495 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:46.183951 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.20463 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.224972 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.288745 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.307164 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.337418 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.356911 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:34:46.390907 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:34:50.330351 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
starting worker pid=353309 on localhost:11272 at 21:34:50.585
starting worker pid=353308 on localhost:11272 at 21:34:50.695
2025-12-26 21:34:59.152366 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:02.81662 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:02.825443 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:02.829801 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=353684 on localhost:11272 at 21:35:03.055
2025-12-26 21:35:06.872823 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.04100000000001 s.} ...
2025-12-26 21:35:06.876792 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=354064 on localhost:11272 at 21:35:07.102
2025-12-26 21:35:10.378599 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.50200000000001 s.
2025-12-26 21:35:10.382573 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=354193 on localhost:11272 at 21:35:10.607
2025-12-26 21:35:14.844632 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.462 s.
2025-12-26 21:35:14.847958 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.022 s.
2025-12-26 21:35:14.854364 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:14.864361 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:14.888284 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:14.898342 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:14.948302 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:14.957616 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:14.969902 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:17.484851 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:17.498242 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:17.542117 gannet.stats.ox.ac.uk 351565 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: ripley, R Under development (unstable) (2025-12-26 r89238), detected cores: 24
2025-12-26 21:35:17.554885 gannet.stats.ox.ac.uk 351565 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-26 21:35:17.594354 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-26 21:35:21.310148 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:24.969155 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=354405 on localhost:11272 at 21:35:25.203
2025-12-26 21:35:28.587647 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.61799999999999 s.
2025-12-26 21:35:28.589926 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=354464 on localhost:11272 at 21:35:28.817
2025-12-26 21:35:32.682988 gannet.stats.ox.ac.uk 351565 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.093 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-26 21:35:32.749885 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:35.317426 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:38.918335 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=354731 on localhost:11272 at 21:35:39.219
2025-12-26 21:35:42.573676 gannet.stats.ox.ac.uk 351565 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.655 s.
2025-12-26 21:35:42.60984 gannet.stats.ox.ac.uk 351565 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-26 21:35:46.405771 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=354905 on localhost:11272 at 21:35:46.642
2025-12-26 21:35:51.242068 gannet.stats.ox.ac.uk 351565 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.833 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [138s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-28 08:07:14.983295 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-28 08:07:20.761603 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-28 08:07:26.256556 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-28 08:07:34.62888 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:40.061649 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:45.520758 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57576 on localhost:11962 at 08:07:45.797
2025-12-28 08:07:48.273229 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.75 s.
2025-12-28 08:07:48.30742 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:53.609794 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:07:58.723841 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-28 08:08:04.001682 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:09.158044 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:12.430488 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:16.4253 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:16.442885 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:21.85535 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.863912 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.872194 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.884614 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.896352 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.908764 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.921765 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:21.939867 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:26.679342 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
starting worker pid=98488 on localhost:11962 at 08:08:26.914
starting worker pid=74240 on localhost:11962 at 08:08:26.951
2025-12-28 08:08:33.251411 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:38.451837 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:38.454274 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:38.457405 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=42448 on localhost:11962 at 08:08:38.678
2025-12-28 08:08:41.530292 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.06 s.} ...
2025-12-28 08:08:41.533111 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=75936 on localhost:11962 at 08:08:41.804
2025-12-28 08:08:44.169725 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.64 s.
2025-12-28 08:08:44.171978 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=18388 on localhost:11962 at 08:08:44.433
2025-12-28 08:08:47.46496 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.28999999999999 s.
2025-12-28 08:08:47.46755 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.00999999999999 s.
2025-12-28 08:08:47.472283 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.474993 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.488424 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.491324 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.525316 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:47.528052 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:47.538139 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:08:51.739838 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:51.742298 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:51.752914 CRANWIN3 68404 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R Under development (unstable) (2025-12-27 r89248 ucrt), detected cores: 96
2025-12-28 08:08:51.7552 CRANWIN3 68404 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-28 08:08:51.785591 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-28 08:08:57.012718 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:02.290384 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=106096 on localhost:11962 at 08:09:02.538
2025-12-28 08:09:05.114394 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.83 s.
2025-12-28 08:09:05.11712 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=88036 on localhost:11962 at 08:09:05.400
2025-12-28 08:09:08.255834 CRANWIN3 68404 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.14 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-28 08:09:08.303428 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:12.520372 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:17.735925 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=87524 on localhost:11962 at 08:09:17.949
2025-12-28 08:09:20.30537 CRANWIN3 68404 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.58 s.
2025-12-28 08:09:20.33904 CRANWIN3 68404 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-28 08:09:25.637269 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=16280 on localhost:11962 at 08:09:25.880
2025-12-28 08:09:29.107894 CRANWIN3 68404 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.46000000000001 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/154s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-24 05:56:02.233677 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-24 05:56:09.007578 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-24 05:56:14.153259 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-24 05:56:22.844967 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:56:27.920341 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:56:32.622691 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1431728 on localhost:11719 at 05:56:32.991
2025-12-24 05:56:36.649458 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.027 s.
2025-12-24 05:56:36.737625 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:56:41.547067 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:56:46.629246 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-24 05:56:51.321513 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:56:56.117462 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:56:59.477813 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:57:02.702593 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:02.738006 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:57:07.60434 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.632369 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.668262 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.710548 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.746562 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.768637 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.805045 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:07.833274 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:57:12.652657 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
starting worker pid=1442145 on localhost:11719 at 05:57:13.073
starting worker pid=1442146 on localhost:11719 at 05:57:13.094
2025-12-24 05:57:20.96564 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:57:26.27615 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:26.283433 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-24 05:57:26.287799 gimli2 1420650 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1445237 on localhost:11719 at 05:57:26.636
2025-12-24 05:57:31.265884 gimli2 1420650 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.976 s.} ...
2025-12-24 05:57:31.268247 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1447064 on localhost:11719 at 05:57:31.653
2025-12-24 05:57:35.08694 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.818 s.
2025-12-24 05:57:35.089378 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1448188 on localhost:11719 at 05:57:35.553
2025-12-24 05:57:40.709281 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.61999999999999 s.
2025-12-24 05:57:40.717003 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.428 s.
2025-12-24 05:57:40.726354 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:40.737785 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-24 05:57:40.777482 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:40.791359 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-24 05:57:40.862303 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:40.873276 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-24 05:57:40.902886 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:57:44.789201 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:44.801359 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-24 05:57:44.827223 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32
2025-12-24 05:57:44.839198 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-24 05:57:44.902013 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-24 05:57:50.86983 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:57:55.766333 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1452950 on localhost:11719 at 05:57:56.305
2025-12-24 05:58:00.225276 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.459 s.
2025-12-24 05:58:00.227682 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=1454140 on localhost:11719 at 05:58:00.569
2025-12-24 05:58:05.400198 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.173 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-24 05:58:05.539531 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:58:09.266581 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:58:13.639235 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=1457585 on localhost:11719 at 05:58:14.165
2025-12-24 05:58:17.747804 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.108 s.
2025-12-24 05:58:17.796478 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-24 05:58:23.435733 gimli2 1420650 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=1461182 on localhost:11719 at 05:58:23.837
2025-12-24 05:58:29.551028 gimli2 1420650 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.11199999999999 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [85s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-27 05:42:19.104377 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-27 05:42:25.979498 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-27 05:42:31.96309 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-27 05:42:40.992554 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:42:46.24367 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:42:52.037609 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=844849 on localhost:11984 at 05:42:52.401
2025-12-27 05:42:57.404636 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.367 s.
2025-12-27 05:42:57.478066 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:03.019006 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:09.436839 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-27 05:43:15.234072 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:19.998547 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:24.004356 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:27.770642 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:27.803351 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:32.782964 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.822962 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.858173 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.894551 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.926379 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.956248 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:32.997803 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:33.035219 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:38.537569 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
starting worker pid=857200 on localhost:11984 at 05:43:38.888
starting worker pid=857201 on localhost:11984 at 05:43:38.983
2025-12-27 05:43:47.262992 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:43:52.127838 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:43:52.143196 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:43:52.152311 gimli2 832655 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=861193 on localhost:11984 at 05:43:52.544
2025-12-27 05:43:57.366121 gimli2 832655 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.208 s.} ...
2025-12-27 05:43:57.368708 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=862605 on localhost:11984 at 05:43:57.766
2025-12-27 05:44:02.452229 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 5.083 s.
2025-12-27 05:44:02.460178 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=863635 on localhost:11984 at 05:44:02.818
2025-12-27 05:44:08.661345 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 6.20100000000001 s.
2025-12-27 05:44:08.663622 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 16.52 s.
2025-12-27 05:44:08.672938 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:08.681226 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:08.705635 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:08.719112 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:08.797773 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:08.811455 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:08.849041 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:12.414136 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:12.427572 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:12.460131 gimli2 832655 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 (2025-10-31), detected cores: 32
2025-12-27 05:44:12.473627 gimli2 832655 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 05:44:12.545711 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-27 05:44:17.674585 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:22.394511 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=868365 on localhost:11984 at 05:44:22.770
2025-12-27 05:44:26.95224 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.55800000000002 s.
2025-12-27 05:44:26.954828 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=869330 on localhost:11984 at 05:44:27.490
2025-12-27 05:44:31.782852 gimli2 832655 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.828 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-27 05:44:31.846953 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:36.530302 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:42.545933 gimli2 832655 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=873507 on localhost:11984 at 05:44:42.939
2025-12-27 05:44:46.553329 gimli2 832655 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.00700000000001 s.
2025-12-27 05:44:46.583067 gimli2 832655 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 05:44:52.246751 gimli2 832655 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=876621 on localhost:11984 at 05:44:52.683
2025-12-27 05:44:58.126549 gimli2 832655 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 5.87699999999998 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [138s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-27 06:49:31.307111 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-27 06:49:36.558317 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-27 06:49:41.72513 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-27 06:49:49.89894 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:49:55.615726 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:00.895328 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=60368 on localhost:11414 at 06:50:01.155
2025-12-27 06:50:03.708429 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.82 s.
2025-12-27 06:50:03.753803 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:09.432486 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:15.037076 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-27 06:50:20.488136 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:25.769128 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:29.493245 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:33.472359 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:33.491045 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:38.337484 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.348021 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.358031 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.36811 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.378037 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.387848 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.397293 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:38.408281 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:43.61634 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
starting worker pid=41508 on localhost:11414 at 06:50:43.884
starting worker pid=60244 on localhost:11414 at 06:50:43.916
2025-12-27 06:50:50.639274 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:50:55.658093 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:50:55.661267 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 06:50:55.666224 CRANWIN3 71168 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=92148 on localhost:11414 at 06:50:55.910
2025-12-27 06:50:58.537636 CRANWIN3 71168 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 2.88 s.} ...
2025-12-27 06:50:58.541003 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=77732 on localhost:11414 at 06:50:58.768
2025-12-27 06:51:01.335015 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.79000000000001 s.
2025-12-27 06:51:01.337811 CRANWIN3 71168 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=14900 on localhost:11414 at 06:51:01.571
2025-12-27 06:51:04.981028 CRANWIN3 71168 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.64 s.
2025-12-27 06:51:04.983815 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 9.31 s.
2025-12-27 06:51:04.988723 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:51:04.991421 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 06:51:05.004149 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:51:05.006174 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 06:51:05.036672 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:51:05.039361 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 06:51:05.051682 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:51:08.757285 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:51:08.759655 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 06:51:08.769941 CRANWIN3 71168 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.5.2 (2025-10-31 ucrt), detected cores: 96
2025-12-27 06:51:08.772257 CRANWIN3 71168 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-27 06:51:08.802003 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-27 06:51:13.677893 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:51:18.908004 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57500 on localhost:11414 at 06:51:19.194
2025-12-27 06:51:21.610269 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.69 s.
2025-12-27 06:51:21.612873 CRANWIN3 71168 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=54736 on localhost:11414 at 06:51:21.889
2025-12-27 06:51:24.639231 CRANWIN3 71168 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 3.02000000000001 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-27 06:51:24.694535 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:51:29.092798 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:51:34.326803 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=96016 on localhost:11414 at 06:51:34.591
2025-12-27 06:51:37.129333 CRANWIN3 71168 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 2.81 s.
2025-12-27 06:51:37.159402 CRANWIN3 71168 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-27 06:51:42.123853 CRANWIN3 71168 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=78912 on localhost:11414 at 06:51:42.378
2025-12-27 06:51:45.620311 CRANWIN3 71168 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.5 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.4
Check: tests
Result: ERROR
Running 'testthat.R' [211s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-29 16:29:48.150526 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-29 16:29:57.622229 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-29 16:30:07.740086 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-29 16:30:20.303512 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:30:28.807852 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:30:37.175686 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=38540 on localhost:11535 at 16:30:37.547
2025-12-29 16:30:40.793441 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.63 s.
2025-12-29 16:30:40.853681 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:30:48.68824 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:30:56.867003 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-29 16:31:04.970198 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:31:12.892221 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:17.865994 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:31:24.662279 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:24.676495 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:31:32.941975 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:32.960986 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:32.980706 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:33.000496 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:33.020008 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:33.039837 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:33.059552 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:33.082152 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:31:41.157005 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=63812 on localhost:11535 at 16:31:41.491
starting worker pid=63680 on localhost:11535 at 16:31:41.516
2025-12-29 16:31:50.937762 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:31:59.067074 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:31:59.07144 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 16:31:59.078138 CRANWIN2 72876 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=103568 on localhost:11535 at 16:31:59.449
2025-12-29 16:32:03.482282 CRANWIN2 72876 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.41 s.} ...
2025-12-29 16:32:03.485875 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=57480 on localhost:11535 at 16:32:03.869
2025-12-29 16:32:07.291046 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.81 s.
2025-12-29 16:32:07.294994 CRANWIN2 72876 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=99640 on localhost:11535 at 16:32:07.630
2025-12-29 16:32:11.932067 CRANWIN2 72876 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.63999999999999 s.
2025-12-29 16:32:11.93516 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 12.86 s.
2025-12-29 16:32:11.942117 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:32:11.946683 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 16:32:11.966406 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:32:11.970216 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 16:32:12.025266 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:32:12.028857 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 16:32:12.048668 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:32:18.947648 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:32:18.95168 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 16:32:18.97015 CRANWIN2 72876 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-29 16:32:18.974107 CRANWIN2 72876 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-29 16:32:19.022967 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-29 16:32:26.736039 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:32:34.673074 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=9764 on localhost:11535 at 16:32:35.004
2025-12-29 16:32:38.414411 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.75 s.
2025-12-29 16:32:38.417508 CRANWIN2 72876 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=66012 on localhost:11535 at 16:32:38.704
2025-12-29 16:32:42.565693 CRANWIN2 72876 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.13999999999999 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-29 16:32:42.622335 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:32:49.451958 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:32:57.658826 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=112840 on localhost:11535 at 16:32:57.958
2025-12-29 16:33:01.830777 CRANWIN2 72876 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.17000000000002 s.
2025-12-29 16:33:01.867427 CRANWIN2 72876 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-29 16:33:09.878474 CRANWIN2 72876 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=111764 on localhost:11535 at 16:33:10.237
2025-12-29 16:33:14.28971 CRANWIN2 72876 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.41 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64