Last updated on 2025-12-30 10:51:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 33.58 | 813.83 | 847.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.16 | 539.38 | 563.54 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 65.00 | 1323.65 | 1388.65 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 64.00 | 1321.51 | 1385.51 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 38.00 | 583.00 | 621.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 52.24 | 701.38 | 753.62 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 37.46 | 743.79 | 781.25 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 40.00 | 544.00 | 584.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 128.00 | 136.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 736.00 | 761.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 45.00 | 627.00 | 672.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [109s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-30 21:41:41.582736: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:41.582973: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:41.58642: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:41.593522: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:41.645972: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:41.646121: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:41.648715: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:41.656201: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:41.663643: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:41.663806: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:41.668117: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:41.682838: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:41.683227: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:41.688914: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:41.689044: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:41.892637: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:41.90783: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:41.908311: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:41.930009: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:41.930129: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:41.93464: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:41.96801: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:41.977033: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:41.977199: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:41.985538: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.062823: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:42.063939: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:42.09648: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.096606: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.103799: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.109732: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.116015: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.116165: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.120321: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.134923: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:42.135263: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:42.164205: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.164324: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.166528: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.172558: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.182852: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.183004: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.187257: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.202212: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:42.202634: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:42.220126: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.22024: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.222705: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.229133: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.241451: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.241664: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.246456: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.261448: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:42.261849: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:42.284788: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.284921: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.287148: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.293096: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.302209: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.302347: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.306312: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.321063: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:42.321573: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:42.34022: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.340371: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.342628: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.348618: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.359982: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.360154: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.364847: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.37965: embedding
> test_pipeop_isomap.R: 2025-12-30 21:41:42.380045: DONE
> test_pipeop_isomap.R: 2025-12-30 21:41:42.398736: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.398838: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.400876: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.406424: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.421724: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.421829: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.429045: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.435034: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 21:41:42.440232: Isomap START
> test_pipeop_isomap.R: 2025-12-30 21:41:42.440336: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 21:41:42.442405: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 21:41:42.448405: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [325s/427s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-30 00:36:18.438736: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:18.439292: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:18.48786: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:18.52053: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:18.657525: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:18.657853: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:18.665371: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:18.715645: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:18.783721: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:18.784231: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:18.837703: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:18.975803: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:18.976939: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:19.03142: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:19.031742: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:19.105611: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:19.205635: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:19.209914: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:19.362975: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:19.363282: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:19.412933: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:19.667109: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:19.744625: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:19.745131: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:19.852421: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:20.485192: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:20.489132: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:20.797934: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:20.798259: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:20.959867: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:21.017367: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:21.103348: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:21.104383: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:21.125329: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:21.239181: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:21.253258: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:21.581888: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:21.58217: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:21.610768: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:21.651629: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:21.765837: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:21.766756: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:21.797529: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:21.916323: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:21.91746: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:22.075067: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:22.075367: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:22.095205: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:22.148455: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:22.249366: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:22.249788: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:22.332287: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:22.421819: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:22.45077: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:22.618012: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:22.619597: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:22.626609: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:22.681263: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:22.787747: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:22.788184: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:22.821296: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:22.934097: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:22.936316: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:23.079606: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:23.079904: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:23.10705: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:23.146871: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:23.251915: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-30 00:36:23.252358: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:23.266509: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:23.399331: embedding
> test_pipeop_isomap.R: 2025-12-30 00:36:23.400532: DONE
> test_pipeop_isomap.R: 2025-12-30 00:36:23.58824: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:23.588542: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:23.670597: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:23.74911: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:23.929067: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:23.929353: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:23.952214: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:23.989866: Classical Scaling
> test_pipeop_isomap.R: 2025-12-30 00:36:24.043514: Isomap START
> test_pipeop_isomap.R: 2025-12-30 00:36:24.043803: constructing knn graph
> test_pipeop_isomap.R: 2025-12-30 00:36:24.050885: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-30 00:36:24.118207: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_randomprojection.R:6:3',
'test_pipeop_randomresponse.R:5:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [281s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-29 16:43:04.894884: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:04.895979: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:04.911432: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:04.929833: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:04.977726: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:04.978196: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:04.988201: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.009231: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:05.039689: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.040373: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.057375: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.101656: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:05.10309: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:05.143283: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.144043: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.167244: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.217926: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:05.219741: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:05.350116: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.350722: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.376445: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.477853: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:05.558452: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:05.559253: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:05.600312: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:05.843249: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:05.848632: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:06.063926: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.064509: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.075945: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.094892: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:06.145816: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.146667: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.167721: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.211328: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:06.212719: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:06.424735: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.425361: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.452273: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.47401: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:06.550731: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.55163: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.572063: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.621089: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:06.622483: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:06.745437: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.746171: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.756264: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.778414: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:06.860723: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:06.861638: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:06.882226: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:06.947569: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:06.949285: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:07.069397: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.070136: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.081528: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.103276: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.172543: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.173476: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.191375: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.231745: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:07.233122: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:07.357455: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.357913: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.366637: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.389203: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.457666: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.458923: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.48235: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.518177: embedding
> test_pipeop_isomap.R: 2025-12-29 16:43:07.519997: DONE
> test_pipeop_isomap.R: 2025-12-29 16:43:07.652329: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.65276: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.662851: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.686006: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.790137: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.790768: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.79911: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.81472: Classical Scaling
> test_pipeop_isomap.R: 2025-12-29 16:43:07.852248: Isomap START
> test_pipeop_isomap.R: 2025-12-29 16:43:07.852877: constructing knn graph
> test_pipeop_isomap.R: 2025-12-29 16:43:07.865244: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-29 16:43:07.888866: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64