R: Site Occupancy Modeling for Environmental DNA Metabarcoding

# Site Occupancy Modeling for Environmental DNA Metabarcoding

## Documentation for package ‘occumb’ version 1.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

eval_util_L | Expected utility for local species diversity assessments.
eval_util_R | Expected utility for regional species diversity assessments.
fish | Fish eDNA metabarcoding dataset
fish_raw | Fish eDNA metabarcoding dataset
get_posterior | Extract posterior samples or summary of parameters from a model-fit object.
get_post_samples | Extract posterior samples or summary of parameters from a model-fit object.
get_post_summary | Extract posterior samples or summary of parameters from a model-fit object.
gof | Goodness-of-fit assessment of the fitted model.
list_cond_L | Conditions for local assessment under certain budget and cost values.
list_cond_R | Conditions for regional assessment under certain budget and cost values.
occumb | Model-fitting function.
occumbData | Constructor for occumbData data class.
plot-method | Plot method for occumbFit class.
plot-method | Plot method for occumbGof class.
predict-method | Predict method for occumbFit class.
summary-method | Summary method for occumbData class.
summary-method | Summary method for occumbFit class.