R: Useful Wrappers Around Commonly Used Functions

# Useful Wrappers Around Commonly Used Functions

## Documentation for package ‘wrappedtools’ version 0.9.8

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bt | Add backticks to names or remove them
cat_desc_stats | Compute absolute and relative frequencies.
cat_desc_table | Compute absolute and relative frequencies for a table.
cn | Shortcut for colnames()
ColSeeker | Find numeric index and names of columns based on class(es) and patterns
compare2numvars | Comparison for columns of numbers for 2 groups
compare2qualvars | Comparison for columns of factors for 2 groups
compare_n_numvars | Comparison for columns of Gaussian or ordinal measures for n groups
compare_n_qualvars | Comparison for columns of factors for more than 2 groups with post-hoc
cortestR | Correlations with significance
detect_outliers | Find outliers based on IQR
eGFR | Estimation of glomerular filtration rate (eGFR) based on sex, age, and either serum creatinine and/or cystatin C
faketrial | Results from a simulated clinical trial with interaction effects.
FindVars | Find numeric index and names of columns based on patterns
flex2rmd | Transform flextable to rmd if non-interactive
formatP | Re-format p-values, avoiding rounding to 0 and adding surprisal if requested
ggcormat | Print graphical representation of a correlation matrix.
glmCI | Confidence interval for generalized linear models
identical_cols | Find and optionally remove identical columns in a data frame.
ksnormal | Kolmogorov-Smirnov-Test against Normal distribution
label_outliers | Add labels to outliers in boxplot/beeswarm.
logrange_1 | Predefined sets of labels for plots with log-scaled axes
logrange_123456789 | Predefined sets of labels for plots with log-scaled axes
logrange_12357 | Predefined sets of labels for plots with log-scaled axes
logrange_15 | Predefined sets of labels for plots with log-scaled axes
logrange_5 | Predefined sets of labels for plots with log-scaled axes
markSign | Convert significance levels to symbols
meansd | Compute mean and sd and put together with the ± symbol.
meanse | Compute mean and standard error of mean and put together with the ± symbol.
mean_cl_boot | Compute confidence interval of mean by bootstrapping.
medianse | Compute standard error of median.
median_cl_boot | Compute confidence interval of median by bootstrapping.
median_cl_boot_gg | Rename output from median_cl_boot for use in ggplot.
median_quart | Compute median and quartiles and put together.
pairwise_fisher_test | Pairwise Fisher's exact tests
pairwise_ordcat_test | Pairwise comparison for ordinal categories
pairwise_t_test | Extended pairwise t-test
pairwise_wilcox_test | Pairwise Wilcoxon tests
pdf_kable | Enhanced knitr::kable with latex
plot_LB | Lineweaver-Burk diagram
plot_MM | Michaelis-Menten enzyme kinetics model and plot
print_kable | Enhanced knitr::kable with definable number of rows and/or columns for splitting
roundR | Automatic rounding to a reasonable length, based on largest number
SEM | Standard Error of Mean.
se_median | Compute standard error of median
surprisal | Compute surprisal aka Shannon information from p-values
tab.search | Search within data.frame or tibble
t_var_test | Independent sample t-test with test for equal variance
var_coeff | Compute coefficient of variance.
WINratio | Comparison for groups in clinical trials based on all possible combinations of subjects