# Prepare MCMCtree Analyses and Plot Bayesian Divergence Time Analyses Estimates on Trees

## Documentation for package ‘MCMCtreeR’ version 1.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

apeData | ApeData Ape phylogeny in ape format, monophyletic clades, and maximum and minimum ages
estimateBound | Estimate a Uniform Distribution for MCMCtree
estimateCauchy | Estimate Cauchy Distribution for MCMCtree
estimateFixed | Fixed Age for MCMCtree analysis input
estimateGamma | Estimate Gamma Distribution for MCMCtree analysis
estimateSkewNormal | Estimate Skew Normal for MCMCtree analysis
estimateSkewT | Estimate Skew-t Distribution for MCMCtree analysis
estimateUpper | Estimate Upper Age for MCMCtree analysis
MCMC.tree.plot | Plot time-scaled phylogenies
MCMCtree.output | MCMCtree.output
MCMCtreePhy | MCMCtreePhy
nodeToPhy | Add Node Constraints to Tree in MCMCtree Format
plotMCMCtree | Plot distribution from MCMCtree node estimations
priorPosterior | priorPosterior
readMCMCtree | Read MCMCtree output tree into R
tipDes | Find Descendent Tips From A Common Ancestor