# Create and Evaluate NONMEM Models in a Project Context

## Documentation for package ‘nonmemica’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

nonmemica-package | Create and Evaluate NONMEM Models in a Project Context
absolute | Check if File Path is Absolute
as.best.default | Convert Vector to Best of Numeric or Character
as.bootstrap.bootstrap | Create Bootstrap from Bootstrap
as.halfmatrix.default | Coerce to Half Matrix by Default
as.init.init | Coerce init to init
as.inits.list | Coerce list to inits
as.matrix.halfmatrix | Coerce Half Matrix to Matrix
as.model.character | Coerce character to model
as.xml_document | Create an xml_document in a Project Context
as.xml_document.character | Create xml_document From Character
as.xml_document.xml_document | Create an xml_document in a Project Context
as_nms_canonical | Coerce to 'nms_canonical'
as_nms_nonmem | Coerce to 'nms_nonmem'
as_nms_pmx | Coerce to 'nms_pmx'
as_nms_psn | Coerce to 'nms_psn'
comments.inits | Extract Comments from Inits
comments.items | Extract Comments from Items
comments.model | Extract Comments from Model
contains | Check Whether Text Contains Pattern
datafile.character | Identify the Datafile for a Model
definitions | Harvest Model Item Definitions
definitions.character | Harvest Model Item Definitions
definitions.definitions | Create Model Item Definitions from definitions
depends.default | Identify Model Dependencies
errors.character | Get Errors for Character
estimates.character | Get Estimates for Character
filter_estimation | Filter XML for Relevant Estimation Step
fixed.init | Check if init is fixed
fixed.model | Check If Model is Fixed
generalize | Generalize a Nonmissing Value
ignored | Extract Index for Ignored Records
initial.model | Get Model Initial Estimates
initial<-.model | Set Upper Bounds for Model Initial Estimates
likebut | Modify a Model
lower.model | Get Lower Bounds for Model Initial Estimates
lower<-.model | Set Lower Bounds for Model Initial Estimates
meta.character | Get Metadata for Character
metaplot.character | Metaplot Character
metaplot_character | Metaplot Character, Standard Evaluation
metasuperset | Retrieve Model Outputs with Metadata
modeldir | Identify the Directory for a Model
modelfile | Identify the Modelfile for a Model
modelpath | Resolve A Path to a Model-related File
modelpath.character | Resolve A Path to a Model-related File for Character
ninput | Calculate Number of Inputs
ninput.character | Calculate Number of Inputs for Character
ninput.numeric | Calculate Number of Inputs for Numeric
nms | Translate Parameter Names
nms_canonical.character | Generate Canonical Names for Character
nms_canonical.model | Generate Canonical Names for Model
nms_canonical.nms_nonmem | Convert NONMEM Parameter Names to Canonical
nms_nonmem.character | Generate NONMEM Names for Character
nms_nonmem.model | Generate NONMEM Names for Model
nms_nonmem.nms_canonical | Convert Canonical Parameter Names to NONMEM
nms_nonmem.nms_pmx | Convert pmxTools Names to NONMEM
nms_pmx.nms_canonical | Convert Canonical Names to pmxTools
nms_pmx.nms_nonmem | Convert NONMEM Names to pmxTools
nms_psn.character | Generate PsN-style Names for Character
nms_psn.model | Generate PsN-style Names for Model
nonmemica | Create and Evaluate NONMEM Models in a Project Context
offdiag.halfmatrix | Isolate Off-diagonal of Half Matrix
parameters.character | Get Parameters for Character
partab | Create Parameter Table
partab.character | Create a Parameter Table from Model Name
partab.partab | Create Parameter Table
problem.character | Identify the Model Problem Statement for Character
psn_nested | PsN Model File is Nested
psn_options | Set PsN Options
readxml | Read XML with Conditional Filtering
relativizePath | Relativize a Path
resolve | Resolve File Path
rosetta | Translate Parameter Names
runlog.character | Create a Runlog for Character
safe_join | Join Data Safely
safe_join.data.frame | Join Data Frames Safely
shuffle | Move the Columns of a Data Frame Relative to Each Other
specfile.character | Identify the Data Specification File for a Model
superset.character | Coerce to Superset from Character
superspec | Create Specification for Model Inputs and Outputs
superspec.character | Create Specification for Model Inputs and Outputs From Character
superspec.numeric | Create Specification for Model Inputs and Outputs From Numeric
tad | Calculate Time Since Most Recent Dose
tad1 | A NONMEM-like Dataset
tod | Calculate Time of Most Recent Dose
tweak.default | Tweak a Model by Default
tweak.model | Tweak Model
updated.character | Create the Updated Version of Character
upper.model | Get Upper Bounds for Model Initial Estimates
upper<-.model | Set Upper Bounds for Model Initial Estimates
xpath | Evaluate Xpath Expression
xpath.default | Evaluate xpath Expression in Default Context
xpath.xml_document | Evaluate xpath Expression in Document Context