# A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

## Documentation for package ‘cinaR’ version 0.2.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

annotatePeaks | annotatePeaks
bed | Example peaks from bone marrow of B6 mice
cinaR | cinaR
color_values | color values
differentialAnalyses | Differential Analyses
dot_plot | dot_plot
filterConsensus | filterConsensus
grch37 | Grch37
grch38 | Grch38
grcm38 | Grcm38
GSEA | GSEA
heatmap_differential | heatmap_differential
heatmap_var_peaks | heatmap_var_peaks
HPEA | HPEA
normalizeConsensus | normalizeConsensus
pca_plot | pca_plot
prep_scATAC_cinaR | prep_scATAC_cinaR
prep_scATAC_seurat | prep_scATAC_seurat
run_enrichment | run_enrichment
scale_rows | scale_rows
show_comparisons | show_comparisons
verboseFn | verboseFn
vp2008 | Immune modules