61214bbecf3f6af973be7a2a60295c45 *BUGS.txt
77a528c2cbae934c2f285a11ee195b35 *CITATION
8d4e9ec487fa0f804b8b543ec2983323 *DESCRIPTION
edeb307a6ba69a3e1a6281f47905ff13 *INDEX
6d586b46676ef850104ae3be229e1529 *INSTALL_ME.txt
c8b990e307ecee343beb5a217265ffcf *MQM-TODO.txt
3986f2fe9a4ca812c99c79e03bcb5e4d *Meta/Rd.rds
4c18c97ee68f0b2c7cb3dec92ade7bb8 *Meta/data.rds
854c930838846579e84a22a721624a4d *Meta/features.rds
1c2f9b6418b0754a63f39aa19b80e081 *Meta/hsearch.rds
677fd91a117fb3d2adec4342ad5bb4c3 *Meta/links.rds
a878a72e727006e706484e7806587043 *Meta/nsInfo.rds
4332a63509e99612e419f6dcede180ed *Meta/package.rds
b4d9b23c800bbc2f2fee17bea3224323 *Meta/vignette.rds
62828318221a847e7f41b6d51f00b703 *NAMESPACE
889480dbd88bd8f68b687e8db7c76ec3 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/qtl
c84524fff2b5ad931c15000142e3a95c *R/qtl.rdb
f3118e0f1a82ab8631d92b55fdd0e866 *R/qtl.rdx
1723dec70d7b0ed3c1c99e7b7581e948 *contrib/bin/CMakeLists.txt
1e10167bc08e8c501be1ac201247af7d *contrib/bin/FindRLibs.cmake
a2151c53575c7e54ceef324add76f356 *contrib/bin/README
f300bcbb15db0aa41bfa87e4598ca999 *contrib/bin/mqmdebugout.cpp
b7f842cec0ea8e7025a4495586ba4548 *contrib/bin/mqmmain.cpp
872352d722e347e7202db6d5e7208f26 *contrib/bin/regressiontests.bat
72e795393b05712e52d2dfcd013853d2 *contrib/bin/rtest/regression/mqm_listeria1.rtest
1fc00c7595303eb7b28b7c22552e6a32 *contrib/bin/rtest/regression/scanone_mr.rtest
725982f79fa57446b0c29485db932256 *contrib/bin/rtest/test_augmentation.R
200622b9e837aa6daab95d45df5f5c80 *contrib/bin/rtest/test_mqm_hyper_prob.R
ff8da1695c81b1bf1fa5ae33b55f89da *contrib/bin/rtest/test_mqm_listeria1.R
277edd7b8d3d18846bcd4c83d2470fda *contrib/bin/rtest/test_scanone_mr.R
106fc8e130e914c8e1921dca34e3a46f *contrib/bin/scripts/cleanup.sh
cf3c3279879ff2febff55923a96ba6b8 *contrib/bin/scripts/create-diff.sh
973cc58b4269e7e8301bd45983a93b78 *contrib/bin/scripts/profiler.sh
32d1bc0785a5d50f78ae5756d16e9f43 *contrib/bin/scripts/r.sh
f6b6a330299fdb56a874a47f577ebd08 *contrib/bin/scripts/regression_tests.sh
9760ebdd5b902882af0c93ea062e5e96 *contrib/bin/scripts/regression_tests_windows.bat
96a589c2fd23cc2fd5d1ad8eaf425f6e *contrib/bin/test/chrid.dat
cd80cecee345e6e4a8f0f4fa565131d9 *contrib/bin/test/chridhyper.txt
e476e10cab390697d56bb54e9ad6b435 *contrib/bin/test/cofactors.txt
0e5803c6aa09400ba7cca13fa1d2c9dd *contrib/bin/test/filledgenohyper.txt
446a8d08d0deda48af4367932016e95d *contrib/bin/test/geno.dat
3ba90f4528761f630956a01e28da2d02 *contrib/bin/test/genohyper.txt
48aa9dfa5117e23001cdde5d75e9c681 *contrib/bin/test/markerpos.txt
58e0f70e4a38f89e0ea05200b1485f4c *contrib/bin/test/markerposhyper.txt
c8fcff8988bdcad867ab1d623afa53c9 *contrib/bin/test/pheno.dat
c8bad11adb4ec06926194513c745d1c8 *contrib/bin/test/phenohyper.txt
c73498b52f1d78efb2a60720e8b1c48c *contrib/bin/test/regression/debugout_dnorm.txt
27131c5ce714adebfdd4f986662b53a6 *contrib/bin/test/regression/debugout_pbeta.txt
79cdeca0abdbc0e981163e6203a294dd *contrib/bin/test/regression/t11out-test0.txt
db72cd13d6a1e2f81ff68dc4886a1910 *contrib/bin/test/regression/t11out.txt
12edd0259b6630dd1281baf97b2ad7cf *contrib/bin/test/regression/t12out.txt
db11ebfe1d7065970b3187888bb20311 *contrib/bin/test/regression/t13out.txt
4d585be836c907068dab6809184492d0 *contrib/bin/test/regression/t21out.txt
93908e9b72560c748f51fc8edda09cb9 *contrib/bin/test/regression/t22out.txt
ed93df5f2be805fd389820394cf61221 *contrib/bin/test/regression/t23out.txt
076f23f188360ca130a7c4cf428ef4f6 *contrib/bin/test/regression/t24out.txt
421333f8f1a1a217f66601fa1d2ac8a1 *contrib/bin/test/regression/t25out.txt
d3c2546698c6f1a749821630abb0a4d8 *contrib/bin/test/regression/t31out.txt
fa97e5f006391c4a0dbdee6f9c8025fc *contrib/bin/test/regression/t32out.txt
d8acf152a44ae6e0198b2896f4174dcc *contrib/bin/test/regression/t33out.txt
be52b633c566c82bffd9eca8ea0c20c5 *contrib/bin/test/regression/t34out.txt
f43319ef224ad76487b64c22b01a6625 *contrib/bin/test/settings.dat
e03f233c8e59be66d7f013a8db976f58 *contrib/bin/test/settingshyper.txt
446a8d08d0deda48af4367932016e95d *contrib/bin/test/std/genotypes1.txt
fdfed5a596dfe2cfc1c51ef4dbd06b7a *contrib/bin/test/std/genotypes2.txt
3ba90f4528761f630956a01e28da2d02 *contrib/bin/test/std/genotypes2m.txt
2bbf9cf9386f4a96908017107406fcd1 *contrib/bin/test/std/genotypes3.txt
d9c37b331ff43e122bf6443188b3826a *contrib/bin/test/std/genotypes3m.txt
48aa9dfa5117e23001cdde5d75e9c681 *contrib/bin/test/std/markers1.txt
aaadb868ebb6041f45461a184900e31a *contrib/bin/test/std/markers2.txt
73f35c4f2740b77be7c56adf7c33616d *contrib/bin/test/std/markers3.txt
c8fcff8988bdcad867ab1d623afa53c9 *contrib/bin/test/std/phenotypes1.txt
c8bad11adb4ec06926194513c745d1c8 *contrib/bin/test/std/phenotypes2.txt
2411a1ba80fdd818d57ab6baad428651 *contrib/bin/test/std/phenotypes3.txt
9a49e2d18c04c38baa91c18c08095c12 *contrib/bin/test/std/settings1.txt
d552fec023d3136c84922f940a26d75e *contrib/bin/test/std/settings2.txt
88fc63b4af80b742e159b3d2cbec8b60 *contrib/bin/test/std/settings3.txt
c13ea1fd1dbd3322aa0773bb2712d6ab *contrib/bin/test/t11/cofactors.txt
63810466f0b74772939995cff28dbc73 *contrib/bin/test/t12/cofactors.txt
87726298c97c135ec4caaa1d77c4c3d0 *contrib/bin/test/t22/cofactors.txt
9ba0cb2dbebbf849508443e305ad22f8 *contrib/bin/test/t23/cofactors.txt
aa492705f6ef171b31d4b95208da2279 *contrib/bin/test/t33/cofactors.txt
4b9c827a80e2681861dc2d41baa7212c *contrib/bin/wincompile.bat
4b07a887cd026fadbcd9f986054f3236 *contrib/biolib/CMakeLists.txt
d89ef8ce1e7a097fb859b6f0463a28ee *contrib/biolib/README
73c7b09cfe6ae19cc28961e64ee7d8fd *contrib/scripts/check_rqtl.sh
f605130493a82e5e91911de5b6b8b6c1 *contrib/scripts/cleanup.sh
2b3f7306cdc6fb6add972d40a09d7028 *contrib/scripts/install_rqtl.sh
4baff6b3f8629e5d4a5b551a05b2b9f4 *contrib/scripts/repl_inputs.rb
6e30a9820a443a31db0538cf07c06531 *contrib/scripts/run_all_tests.sh
241ab5cd315e17513c395de2703aeec3 *contrib/scripts/update_header.rb
4b16eee0874d202df8b4e07040266c76 *data/badorder.RData
9716d40bf48ff2cfb31ae9967a491f10 *data/bristle3.RData
73b987c7b87ae78dd53609c1ed22a23f *data/bristleX.RData
00af5998d846a86104aba7e07d6e1166 *data/fake.4way.RData
7f595e8806cd4eb09eab83b9ef950073 *data/fake.bc.RData
bf593cc6dccc90dac0271e4e5c8472db *data/fake.f2.RData
6e2f9abb36c66aa56f9bbbd5c2132b47 *data/hyper.RData
9f82f82918cc15f99201f012b83051bf *data/listeria.RData
4866e90816cea0090756902b3405c56f *data/locations.RData
86ed773f48d1c2fdf6e2dee14888cb4e *data/map10.RData
163d74d62513df7ae66f3b6f397ad56a *data/mapthis.RData
a8b4703dbcb8104b2a669caab51ba3e1 *data/multitrait.RData
c5a2ee3e930b1755c96a48b0ec3d4e98 *doc/Sources/MQM/MQM-tour.R
1211a56d552361b5b08d7da328f4823e *doc/Sources/MQM/MQM-tour.Rnw
aae9b12b0e7483f95697039886b74ed3 *doc/Sources/MQM/MQM-tour.tex
33c6a39f98c9f6ea383bb7e6120c80d6 *doc/Sources/MQM/SweaveIt.R
c1c634bc94ea56778fe387637235901e *doc/Sources/MQM/SweaveIt.Rout
8b9c03961a1f83a3593dd2c4f424f0ee *doc/Sources/MQM/mqm/advantages_Rd.txt
9ae2c3be23d6b18713df99dea771bc74 *doc/Sources/MQM/mqm/advantages_latex.txt
e5963995b8306a5709edb4a82d312737 *doc/Sources/MQM/mqm/description.txt
f5b5b37278192ed8e6221277182b499b *doc/Sources/MQM/mqm/limitations.txt
fe67beb7507899b848f71b812c71fd44 *doc/Sources/MQM/mqm/parallelisation_references.txt
33c48149918dc1bb67bc4dc32941d1d3 *doc/Sources/MQM/mqm/significance_references.txt
cbec485f87463463f5920867f8f7852b *doc/Sources/MQM/mqm/standard_example.txt
00c8d3ee12a9126fd90c00fb8236d0d4 *doc/Sources/MQM/mqm/standard_references.txt
93128a9804b2fd0b1be62bdc61506f4a *doc/Sources/MQM/mqm/standard_seealso.txt
dce125c0ba08d0504b05baf36296dc94 *doc/Sources/MQM/sweaveit.bat
b069721f290cbd45cc9a1d4a13c93603 *doc/Sources/MQM/sweaveit.sh
ce27d0a1a38d1c43e3da6accf92df372 *doc/Sources/geneticmaps.Rnw
380f79ca75c5ac3187513d674862dac8 *doc/Sources/new_multiqtl.Rnw
7743409fb09a35b80fb22da863cbea8b *doc/Sources/new_summary_scanone.Rnw
2d06706e91525e0e8f56ca2b2f025636 *doc/Sources/new_summary_scantwo.Rnw
6e5dd7b4462c4d1b74d3dd2da38f5796 *doc/Sources/rqtltour.tex
b8f91bbddb0c0dcee45085b0fe945c6f *doc/Sources/rqtltour2.tex
f61f48adc17761dab61e5035a6037632 *doc/bcsft.R
504a78535def937ee020d9e8f1de9b55 *doc/bcsft.Rnw
48c43b945610fa39b037e37e95fa5c66 *doc/bcsft.pdf
ccbd21a4f84d3800e3330b0171883b26 *doc/geneticmaps.R
f326aab03d4745094152713cca6cbe25 *doc/geneticmaps.pdf
bb1a171d65ecd6cd6169c94f96b52d16 *doc/index.html
40eb8179441ce7496f6c5e252c8b2b56 *doc/new_multiqtl.R
2bfd394e7e6556f6f7043e9034c64234 *doc/new_multiqtl.pdf
b7ee88c6b1ce5df40209c9bd58acf9b8 *doc/new_summary_scanone.R
1e49e4956c20a4fb3554633734be1bbb *doc/new_summary_scanone.pdf
a808a0dcf90e74a422bf3ea84f4bd55b *doc/new_summary_scantwo.R
83dbe80c9f5b641b0b269be341c80df2 *doc/new_summary_scantwo.pdf
20f1ad8aeb8fd6c722ed5a3de0885cc8 *doc/rqtltour.R
f507aef4a1b384356aff2d4716839c9d *doc/rqtltour.pdf
ea48cfd7fee328162b3fb49a827f3606 *doc/rqtltour2.R
247e6eff4fc6767c8031715d3737fef1 *doc/rqtltour2.pdf
3388afd73b69ebb11dfef6a74bdaa896 *help/AnIndex
b84181d106fa650c9d7efe5649c4ffda *help/aliases.rds
7366bd749ece0b6c00dab236961a4cdb *help/paths.rds
09eb8dac3a2a3fa59b55f9a115b21615 *help/qtl.rdb
09a8b475092be1bf46d4c92053b65b27 *help/qtl.rdx
8f8c0002ca09c1618343bb8083a725a5 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
5b8f95804fbe52833e48f9c07e185bc9 *libs/x64/qtl.dll
e34574bb0beed8d038b45a4b9d2108c6 *libs/x64/symbols.rds
1b42a662f601adaa9660800eefa4e42f *sampledata/README.txt
f6a9eebc3f37d26e0a5b8ed672354712 *sampledata/gen.txt
9198bd35e7a221556c5e2008d00cf84c *sampledata/listeria.csv
846a80e9b730dc4a5144437d1563f0a0 *sampledata/listeria.qtx
e064a29e8b8199c38b094b9c8170b434 *sampledata/listeria_gen.csv
2dcca54c31a1e372c6da15881636d2c4 *sampledata/listeria_gen_rot.csv
01b987cb739560eafac3cf41ec0c6154 *sampledata/listeria_map.txt
3bc93e86db600b2f263a1a197269e8de *sampledata/listeria_maps.txt
9bc5c1daf65145ed51a7acf1c30e6146 *sampledata/listeria_phe.csv
216700811ae74ee1d581d7cff9504f05 *sampledata/listeria_phe_rot.csv
3efd61cac8e5cdbba21f04c0d5a56adc *sampledata/listeria_qc_cro.txt
a857de8b79fd03837008a0d750dfad9c *sampledata/listeria_qc_map.txt
8520b0234e8d59152126248b0cfa7566 *sampledata/listeria_raw.txt
af7100ff129f117e5d3b67cd10a76f63 *sampledata/listeria_rot.csv
dde45251d41488fedc3693dc67fc9429 *sampledata/map.txt
ffecb0696dd5873a13e48157180271fa *sampledata/phe.txt
