# Create Complex UpSet Plots Using 'ggplot2' Components

## Documentation for package ‘ComplexUpset’ version 1.3.3

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package README

## Help Pages

aes_percentage | Generate mapping for labeling percentages
arrange_venn | Arrange points for Venn diagram
compare_between_intersections | Compare covariates between intersections
create_upset_abc_example | Create an example dataset with three sets: A, B and C
geom_venn_circle | Circle for Venn diagram
geom_venn_label_region | Label for a region of Venn diagram
geom_venn_label_set | Label for a set of Venn diagram
geom_venn_region | Region of Venn diagram
get_size_mode | Retrieve symbol for given mode that can be used in aesthetics mapping with double bang (!!)
intersection_matrix | Prepare layers for sets sizes plot
intersection_ratio | Barplot annotation of relative intersections sizes
intersection_size | Barplot annotation of intersections sizes
reverse_log_trans | Logarithmic scale for use with 'upset_set_size()'
scale_color_venn_mix | Color scale for Venn diagram
scale_fill_venn_mix | Fill scale for Venn diagram
upset | Compose an UpSet plot
upset_annotate | Annotation panel shorthand
upset_data | Prepare data for UpSet plots
upset_default_themes | Default themes modified by specified arguments
upset_mode | Layer defining the intersection mode for the data to be displayed
upset_modify_themes | Default themes modified by specified component-specific arguments
upset_query | Highlight chosen sets or intersections
upset_set_size | Prepare layers for sets sizes plot
upset_stripes | Define appearence of the stripes
upset_test | Test for differences between intersections
upset_text_percentage | Generate percentage label of the intersection/union sizes ratio
upset_themes | List of default themes for upset components