Last updated on 2026-06-29 13:49:04 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.3 | 17.95 | 152.92 | 170.87 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.3.3 | 11.56 | 106.15 | 117.71 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.3.3 | 29.00 | 251.91 | 280.91 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.3 | 30.00 | 307.97 | 337.97 | OK | |
| r-devel-windows-x86_64 | 0.3.3 | 26.00 | 157.00 | 183.00 | OK | |
| r-patched-linux-x86_64 | 0.3.3 | 16.89 | 144.94 | 161.83 | OK | |
| r-release-linux-x86_64 | 0.3.3 | OK | ||||
| r-release-macos-arm64 | 0.3.3 | 5.00 | 34.00 | 39.00 | OK | |
| r-release-macos-x86_64 | 0.3.3 | 13.00 | 176.00 | 189.00 | OK | |
| r-release-windows-x86_64 | 0.3.3 | 25.00 | 157.00 | 182.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.3 | 4.00 | 38.00 | 42.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.3 | 17.00 | 374.00 | 391.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.3 | 32.00 | 195.00 | 227.00 | ERROR |
Version: 0.3.3
Check: tests
Result: ERROR
Running 'testthat.R' [41s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # nolint start: undesirable_function_linter.
> library(testthat)
> library(artma)
> # nolint end: undesirable_function_linter.
>
> testthat::test_check("artma", reporter = "summary")
Starting 2 test processes.
autonomy: ..............................SS..................................
bma-auto-select: ........S............S....
> test-bma.R: PIP Post Mean Post SD Cond.Pos.Sign Idx
> test-bma.R: se 0.220 0.098091860 0.333611859 1 1
> test-bma.R: moderator1 0.204 -0.002207148 0.008320551 0 2
> test-bma.R: moderator2 0.122 0.002663056 0.013602410 1 3
> test-bma.R:
> test-bma.R: Mean no. regressors Draws Burnins Time
> test-bma.R: "0.5460" "500" "100" "0.08194804 secs"
> test-bma.R: No. models visited Modelspace 2^K % visited % Topmodels
> test-bma.R: "204" "8" "2550" "100"
> test-bma.R: Corr PMP No. Obs. Model Prior g-Prior
> test-bma.R: "0.9926" "50" "uniform / 1.5" "UIP"
> test-bma.R: Shrinkage-Stats
> test-bma.R: "Av=0.9804"
> test-bma.R:
> test-bma.R: Time difference of 0.08194804 secs
bma: ............................
box-plot-study-label: ..
> test-data-auto-detection-confirmation.R: What would you like to do?
> test-data-auto-detection-confirmation.R: What would you like to do?
data-auto-detection-confirmation: ..................W.W.
bma-collinearity: .................................................
data-column-recognition: .......................................................................................
data-column-resolution: ................................................
data-compute: ......
data-config-defaults: ...............................................
> test-data-config-resolve.R: i Reading data from 'D:\temp\2026_06_27_01_50_00_12844\RtmpUP6JTH\filea41c33dd3cf9.csv'
> test-data-config-resolve.R: v Data read successfully: 1000 rows, 5 columns
data-config-resolve: ..................S.........
> test-data-interactive-mapping.R:
> test-data-interactive-mapping.R: -- Column Mapping Summary --
> test-data-interactive-mapping.R:
> test-data-interactive-mapping.R: study_id (required) -> "study_name"
> test-data-interactive-mapping.R: effect (required) -> "effect"
> test-data-interactive-mapping.R: ! Missing required columns: se, n_obs
> test-data-interactive-mapping.R: Saving column mapping to options
> test-data-interactive-mapping.R: v Column mapping saved
data-index: .
data-interactive-mapping: .......................
data-preview: W.W.W.W....W.......
> test-data-smart-detection.R: i Removing 1 empty column: "empty"
> test-data-smart-detection.R: ! Found duplicate column names: "name"Making names unique...
> test-data-smart-detection.R: i Removing 2 trailing empty rows
> test-data-smart-detection.R: i Removing 2 empty columns: "empty1" and "empty2"
> test-data-smart-detection.R: i Removing 2 trailing empty rows
data-smart-detection: .................................
data-preprocess: ....W.....................
dir_create_linter: ....
data-utils: ............
effect-summary-stats-integration: ................................
effect-summary-stats-interactive: ....................................
effect-summary-stats: ...............
> test-fma.R: PIP Post Mean Post SD Cond.Pos.Sign Idx
> test-fma.R: moderator1 0.304 0.005418825 0.01179750 1 2
> test-fma.R: moderator2 0.254 0.008979515 0.02093167 1 3
> test-fma.R: se 0.146 -0.065870041 0.24726116 0 1
> test-fma.R:
> test-fma.R: Mean no. regressors Draws Burnins Time
> test-fma.R: "0.7040" "500" "100" "0.09826112 secs"
> test-fma.R: No. models visited Modelspace 2^K % visited % Topmodels
> test-fma.R: "275" "8" "3438" "100"
> test-fma.R: Corr PMP No. Obs. Model Prior g-Prior
> test-fma.R: "0.9868" "40" "uniform / 1.5" "UIP"
> test-fma.R: Shrinkage-Stats
> test-fma.R: "Av=0.9756"
> test-fma.R:
> test-fma.R: Time difference of 0.09826112 secs
fma: .......
funnel-plot: ...................
indentation_guard_clause_linter: ....
elliott-simulate-cdfs: .........
libs-editor: ....................
libs-cache: ..............................................................
modules-path: .........
> test-linear-tests.R:
> test-linear-tests.R: -- Linear model tests --
> test-linear-tests.R:
> test-linear-tests.R: Metric OLS Fixed Effects Between Effects
> test-linear-tests.R: Publication Bias -0.25 -0.19 -1.63
> test-linear-tests.R: (Std. Error) (0.30) (0.33) (2.24)
> test-linear-tests.R: Bootstrap CI (PB) [-0.28, 0.36] [-0.55, 0.19] <NA>
> test-linear-tests.R: Effect Beyond Bias 0.21*** 0.20 0.36
> test-linear-tests.R: (Std. Error) (0.03) (0.33) (0.25)
> test-linear-tests.R: Bootstrap CI (Effect) [0.14, 0.21] [0.16, 0.24] <NA>
> test-linear-tests.R: Total Observations 30 30 30
> test-linear-tests.R: Random Effects Study Weighted OLS Precision Weighted OLS
> test-linear-tests.R: -0.23 -0.33 -0.24
> test-linear-tests.R: (0.29) (0.27) (0.24)
> test-linear-tests.R: [-0.58, 0.38] [-0.71, 0.10] [-0.54, 0.01]
> test-linear-tests.R: 0.21*** 0.22*** 0.21***
> test-linear-tests.R: (0.03) (0.02) (0.03)
> test-linear-tests.R: [0.13, 0.24] [0.17, 0.26] [0.19, 0.24]
> test-linear-tests.R: 30 30 30
nonlinear-tests: ..............
> test-linear-tests.R:
> test-linear-tests.R: -- Linear model tests --
> test-linear-tests.R:
> test-linear-tests.R: Metric OLS Fixed Effects Between Effects Random Effects
> test-linear-tests.R: Publication Bias -0.245 -0.193 -1.631 -0.233
> test-linear-tests.R: (Std. Error) (0.304) (0.325) (2.239) (0.294)
> test-linear-tests.R: Bootstrap CI (PB) <NA> <NA> <NA> <NA>
> test-linear-tests.R: Effect Beyond Bias 0.210 0.204 0.364 0.209
> test-linear-tests.R: (Std. Error) (0.030) (0.325) (0.250) (0.029)
> test-linear-tests.R: Bootstrap CI (Effect) <NA> <NA> <NA> <NA>
> test-linear-tests.R: Total Observations 30 30 30 30
> test-linear-tests.R: Study Weighted OLS
> test-linear-tests.R: -0.328
> test-linear-tests.R: (0.268)
> test-linear-tests.R: <NA>
> test-linear-tests.R: 0.218
> test-linear-tests.R: (0.025)
> test-linear-tests.R: <NA>
> test-linear-tests.R: 30
linear-tests: ...........
> test-options-column-preprocessing.R:
> test-options-column-preprocessing.R: -- Auto-detecting column mappings --
> test-options-column-preprocessing.R:
> test-options-column-preprocessing.R: i Reading data from 'D:\temp\2026_06_27_01_50_00_12844\RtmpayHlpn\filea14c403b4fb5.csv'
options-significance-marks: ...
> test-options.R: v The user options file 'valid.yaml' is valid.
> test-options-column-preprocessing.R: Autonomy level is high - using auto-detected column mappings
> test-options.R: x Validation failed.
> test-options.R:
> test-options.R: -- Validation errors found: ----------------------------------------------------
> test-options.R: x Option data.threshold must be numeric/integer, got: four
> test-options.R:
> test-options.R: -- Possible Resolutions:
> test-options.R: * Run `artma::options.help(c('opt.name1', 'opt.name2', ...))` to view detailed
> test-options.R: descriptions of the specified options.
> test-options.R: * Run `artma::options.modify()` to manually modify the options file.
> test-options.R: * Run `artma::options.fix()` to automatically fix detected errors where
> test-options.R: possible.
> test-options.R:
> test-options.R: v The user options file 'valid.yaml' has been successfully copied over to 'copied.yaml'.
> test-options.R: v Creating a user options file 'new.yaml' was successful.
> test-options.R: x Validation failed.
> test-options.R:
> test-options.R: -- Validation errors found: ----------------------------------------------------
> test-options.R: x Option data.threshold must be numeric/integer, got: four
> test-options.R:
> test-options.R: -- Possible Resolutions:
> test-options.R: * Run `artma::options.help(c('opt.name1', 'opt.name2', ...))` to view detailed
> test-options.R: descriptions of the specified options.
> test-options.R: * Run `artma::options.modify()` to manually modify the options file.
> test-options.R: * Run `artma::options.fix()` to automatically fix detected errors where
> test-options.R: possible.
> test-options.R:
> test-options.R:
> test-options.R: -- Fixing User Options File ----------------------------------------------------
> test-options.R: We have detected errors in the user options file: 'invalid.yaml'.
> test-options.R:
> test-options.R: -- Proposed Changes:
> test-options.R: * data.threshold: four -> 10
> test-options.R:
> test-options.R: i Running in non-interactive mode. The proposed changes will be applied automatically.
> test-options.R: An options file 'invalid.yaml' already exists. Overwriting this file...
> test-options.R: v Fixing a user options file 'invalid.yaml' was successful.
> test-options.R: v The user options file 'copied.yaml' has been deleted.
> test-options.R: v Creating a user options file 'to_remove.yaml' was successful.
> test-options.R: v The user options file 'to_remove.yaml' has been deleted.
> test-options.R: ! Options file 'stale.yaml' has 1 missing option and 2 type mismatches. Proceeding with template defaults where possible.
> test-options-column-preprocessing.R:
> test-options-column-preprocessing.R: -- Auto-detecting column mappings --
> test-options-column-preprocessing.R:
> test-options-column-preprocessing.R: i Reading data from 'D:\temp\2026_06_27_01_50_00_12844\RtmpayHlpn\filea14c36e13e5f.csv'
> test-options.R: ! Options file 'stale-no-prefix.yaml' has 1 missing option and 1 type mismatch. Proceeding with template defaults where possible.
options: .....................
> test-options-column-preprocessing.R: Autonomy level is high - using auto-detected column mappings
options-column-preprocessing: .........................
result-formatters: ...
polyfills: ............................................
> test-runtime-methods.R:
Error:
! testthat subprocess exited in file 'test-runtime-methods.R'.
Caused by error:
! R session crashed with exit code -1073741819
Backtrace:
▆
1. └─testthat::test_check("artma", reporter = "summary")
2. └─testthat::test_dir(...)
3. └─testthat:::test_files(...)
4. └─testthat:::test_files_parallel(...)
5. ├─withr::with_dir(...)
6. │ └─base::force(code)
7. ├─testthat::with_reporter(...)
8. │ └─base::tryCatch(...)
9. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
12. └─testthat:::parallel_event_loop_chunky(queue, reporters, ".")
13. └─queue$poll(Inf)
14. └─base::lapply(...)
15. └─testthat (local) FUN(X[[i]], ...)
16. └─private$handle_error(msg, i)
17. └─cli::cli_abort(...)
18. └─rlang::abort(...)
Execution halted
Flavor: r-oldrel-windows-x86_64