“amregtest” stands for “allelematch
regression test”. allelematch
is an R package for identifying and removing duplicate multilocus
genotypes from microsatellite data sets. amregtest verifies
that allelematch remains backwards compatible across
versions.
By decoupling the regression test suite from the main
allelematch source code and its specific
testthat dependencies, amregtest allows you to
run regression tests against any version of
allelematch without modifying the package under test.
You can install the development version of amregtest
from GitHub with:
# install.packages("devtools")
devtools::install_github("torstax/amregtest")library(allelematch)
library(amregtest)Run the full regression test suite against your currently installed
version of allelematch (takes a few minutes):
artRun()## About to test installed version of allelematch: <<<2.5.5>>>
## FAILED WARNINGS SKIPPED OK FILE
## ------------------------------------------------------------------------
## 0 0 0 74 test-allelematch_1-amDataset.R
## 0 0 0 10 test-allelematch_1-amDataset_negative.R
## 0 0 0 30 test-allelematch_2-amMatrix.R
## 0 0 0 20 test-allelematch_2-amMatrix_negative.R
## 0 0 0 362 test-allelematch_3-amPairwise.R
## 0 0 0 39 test-allelematch_3-amPairwise_negative.R
## 0 1 0 19 test-allelematch_3-amPairwise_print.R
## 0 0 0 1344 test-allelematch_4-amCluster.R
## 0 1 0 19 test-allelematch_4-amCluster_print.R
## 0 0 0 22 test-allelematch_5-amAlleleFreq.R
## 0 0 0 768 test-allelematch_6-amUnique.R
## 0 0 0 42 test-allelematch_6-amUnique_negative.R
## 0 1 0 21 test-allelematch_6-amUnique_print.R
## 0 0 0 13 test-allelematch_7-amUniqueProfile.R
## 0 0 0 16 test-amExample1.R
## 0 0 0 14 test-amExample2.R
## 0 0 0 14 test-amExample3.R
## 0 0 0 14 test-amExample4.R
## 0 0 0 4 test-art_api.R
## 0 0 0 8 test-ggData.R
## ------------------------------------------------------------------------
## 0 3 0 2853 TOTAL
## Done testing installed version of allelematch: <<<2.5.5>>>To run only tests whose names match a Perl regular expression:
artRun(filter = "amExample2|amExample4")## About to test installed version of allelematch: <<<2.5.5>>>
## FAILED WARNINGS SKIPPED OK FILE
## ------------------------------------------------------------------------
## 0 0 1 7 test-amExample2.R
## 0 0 1 9 test-amExample4.R
## ------------------------------------------------------------------------
## 0 0 2 16 TOTAL
## Done testing installed version of allelematch: <<<2.5.5>>>List all available tests without running them:
artList()##
## Tests in files under "C:/Users/Torva/AppData/Local/Temp/RtmpEf1k0b/temp_libpath53f819d62beb/amregtest/tests/testthat/":
##
## Tests by functions in allelematch:
## [1] "allelematch_1-amDataset"
## [2] "allelematch_1-amDataset_negative"
## [3] "allelematch_2-amMatrix"
## [4] "allelematch_2-amMatrix_negative"
## [5] "allelematch_3-amPairwise"
## [6] "allelematch_3-amPairwise_negative"
## [7] "allelematch_3-amPairwise_print"
## [8] "allelematch_4-amCluster"
## [9] "allelematch_4-amCluster_print"
## [10] "allelematch_5-amAlleleFreq"
## [11] "allelematch_6-amUnique"
## [12] "allelematch_6-amUnique_negative"
## [13] "allelematch_6-amUnique_print"
## [14] "allelematch_7-amUniqueProfile"
##
## Reproduction of the examples in 'allelematchSuppDoc.pdf':
## [1] "amExample1" "amExample2" "amExample3" "amExample4"
##
## Other:
## [1] "art_api" "ggData"Check the installed versions of allelematch and
amregtest:
artVersion()##
## Version of package 'amregtest' is 1.0.10
## Installed (and thus tested) version of package 'allelematch' is: 2.5.5